Variant report

Variant	rs10006007
Chromosome Location	chr4:127811037-127811038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:127806872..127808434-chr4:127810720..127812309,2	K562	blood:
2	chr4:127810077..127811688-chr4:127883020..127885703,2	K562	blood:
3	chr4:127809656..127812090-chr4:127818382..127821149,2	K562	blood:
4	chr4:127806872..127808749-chr4:127810720..127812477,2	K562	blood:
5	chr4:127809921..127811534-chr4:127814777..127816891,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10002550	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10011592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10013614	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10018143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022263	0.87[ASN][1000 genomes]
rs10029439	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11098899	0.87[ASN][1000 genomes]
rs11098906	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11729025	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11731081	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12331011	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12499264	0.81[EUR][1000 genomes]
rs12513145	0.87[ASN][1000 genomes]
rs13114412	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13147915	0.87[ASN][1000 genomes]
rs13152355	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13152658	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13435387	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13435810	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1397437	0.87[ASN][1000 genomes]
rs1472701	0.87[ASN][1000 genomes]
rs1503630	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1503633	0.87[ASN][1000 genomes]
rs1510674	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1510686	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1510687	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1510688	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16997940	0.87[ASN][1000 genomes]
rs17208298	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17208690	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17274049	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17274383	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1848934	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1960359	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1995902	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2221773	0.87[ASN][1000 genomes]
rs28376541	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28706560	0.87[ASN][1000 genomes]
rs28711664	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28733864	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28866815	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28881307	0.87[ASN][1000 genomes]
rs28883271	0.87[ASN][1000 genomes]
rs28897108	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36069962	0.87[ASN][1000 genomes]
rs4834144	0.87[ASN][1000 genomes]
rs4834146	0.87[ASN][1000 genomes]
rs4834147	0.87[ASN][1000 genomes]
rs62323482	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62323485	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62323486	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62323519	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6821583	0.91[ASN][1000 genomes]
rs6821961	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6845533	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6849694	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7662706	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7667215	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7676052	0.83[ASN][1000 genomes]
rs955791	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs993364	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9997578	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127794000-127812200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:127803200-127815600	Weak transcription	K562	blood
3	chr4:127808600-127812000	Weak transcription	NHLF	lung
4	chr4:127809800-127812400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:127810000-127812000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:127810000-127812000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:127810800-127812200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:127810800-127812200	Weak transcription	Osteobl	bone
9	chr4:127811000-127811400	Weak transcription	NHDF-Ad	bronchial
10	chr4:127811000-127812000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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