Variant report

Variant	rs6849694
Chromosome Location	chr4:127785374-127785375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10006007	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10011592	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10018143	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10029439	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11098899	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11729025	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11731081	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12331011	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12499264	0.88[EUR][1000 genomes]
rs12513145	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13114412	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13152355	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13152658	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13435387	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13435810	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1472701	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1503630	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1503633	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510674	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16997940	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17208298	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17208690	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17274049	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17274383	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1960359	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995902	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28866815	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28897108	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834144	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834146	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834147	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323482	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323485	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62323486	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62323519	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6845533	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7662706	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7667215	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs993364	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997578	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127772800-127792000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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