Variant report

Variant	rs6821583
Chromosome Location	chr4:127883417-127883418
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:127882715..127885766-chr4:127890453..127894088,4	K562	blood:
2	chr4:127882427..127885134-chr4:127887515..127889574,2	K562	blood:
3	chr4:127881584..127884044-chr4:127886785..127888817,3	K562	blood:
4	chr4:127810077..127811688-chr4:127883020..127885703,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10002550	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10006007	0.91[ASN][1000 genomes]
rs10009534	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10011592	0.91[ASN][1000 genomes]
rs10013614	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10018143	0.91[ASN][1000 genomes]
rs10022263	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10029439	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10031723	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11098906	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11729025	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11731081	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12331011	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12647371	0.81[EUR][1000 genomes]
rs13147915	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13435387	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13435810	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1397437	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1510674	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1510686	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1510687	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510688	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1567490	0.83[EUR][1000 genomes]
rs17011892	0.83[ASN][1000 genomes]
rs17208298	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17208690	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17274049	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17274383	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1848934	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995902	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2221773	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28376541	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28706560	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28711664	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28733864	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28881307	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28883271	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34261493	0.87[ASN][1000 genomes]
rs36069962	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62323485	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62323486	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62323519	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62324472	0.83[ASN][1000 genomes]
rs6821961	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6845533	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7662706	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7667215	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7676052	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7686658	0.87[ASN][1000 genomes]
rs955791	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9997578	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127879600-127885600	Weak transcription	Fetal Brain Male	brain
2	chr4:127883000-127892400	Weak transcription	K562	blood

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