Variant report

Variant	rs10009534
Chromosome Location	chr4:127872546-127872547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127861655..127863830-chr4:127872405..127874629,2	K562	blood:
2	chr4:127857216..127859909-chr4:127872458..127875029,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10002550	0.96[ASN][1000 genomes]
rs10013614	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10022263	0.84[ASN][1000 genomes]
rs10029439	0.88[ASN][1000 genomes]
rs10031723	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11098906	0.96[ASN][1000 genomes]
rs11729025	0.88[ASN][1000 genomes]
rs11731081	0.88[ASN][1000 genomes]
rs12331011	0.88[ASN][1000 genomes]
rs13147915	0.84[ASN][1000 genomes]
rs13435387	0.88[ASN][1000 genomes]
rs13435810	0.88[ASN][1000 genomes]
rs1397437	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1510674	0.88[ASN][1000 genomes]
rs1510686	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1510687	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1510688	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17011892	0.88[ASN][1000 genomes]
rs17208298	0.88[ASN][1000 genomes]
rs17208690	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17274049	0.88[ASN][1000 genomes]
rs17274383	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1848934	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1995902	0.88[ASN][1000 genomes]
rs2221773	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs28376541	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28706560	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs28711664	0.96[ASN][1000 genomes]
rs28733864	0.96[ASN][1000 genomes]
rs28881307	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs28883271	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs36069962	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62323485	0.88[ASN][1000 genomes]
rs62323486	0.88[ASN][1000 genomes]
rs62323519	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62324472	0.88[ASN][1000 genomes]
rs6821583	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6821961	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6845533	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7662706	0.88[ASN][1000 genomes]
rs7667215	0.88[ASN][1000 genomes]
rs7676052	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs955791	0.86[AMR][1000 genomes]
rs9997578	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127871600-127873000	Weak transcription	K562	blood

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