Variant report

Variant	rs11936668
Chromosome Location	chr4:127908277-127908278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10002550	0.82[EUR][1000 genomes]
rs10022263	0.88[EUR][1000 genomes]
rs11098906	0.82[EUR][1000 genomes]
rs12507548	0.88[ASN][1000 genomes]
rs12647371	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13147915	0.91[EUR][1000 genomes]
rs1397435	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1397436	0.82[ASN][1000 genomes]
rs1397437	0.89[EUR][1000 genomes]
rs1510683	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1510686	0.81[EUR][1000 genomes]
rs1510687	0.85[EUR][1000 genomes]
rs1510688	0.85[EUR][1000 genomes]
rs1567490	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16997962	0.81[ASN][1000 genomes]
rs17011980	0.80[ASN][1000 genomes]
rs1848934	0.85[EUR][1000 genomes]
rs2221773	0.91[EUR][1000 genomes]
rs2391122	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28376541	0.84[EUR][1000 genomes]
rs28706560	0.82[EUR][1000 genomes]
rs28711664	0.82[EUR][1000 genomes]
rs28733864	0.81[EUR][1000 genomes]
rs28881307	0.85[EUR][1000 genomes]
rs28883271	0.81[EUR][1000 genomes]
rs36069962	0.92[EUR][1000 genomes]
rs36096326	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4834162	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60662614	0.81[ASN][1000 genomes]
rs6821961	0.85[EUR][1000 genomes]
rs6825686	0.89[CEU][hapmap];0.81[MKK][hapmap]
rs6834341	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6839973	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6839976	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs955791	0.85[EUR][1000 genomes]
rs965298	1.00[CEU][hapmap];0.85[GIH][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127907800-127908400	Enhancers	HMEC	breast
2	chr4:127907800-127908600	Enhancers	NHEK	skin
3	chr4:127908200-127913000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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