Variant report

Variant	rs16997962
Chromosome Location	chr4:127896705-127896706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:127894144..127897160-chr4:127898666..127901470,3	K562	blood:
2	chr4:127876070..127879293-chr4:127896514..127899164,4	K562	blood:
3	chr4:127880049..127882565-chr4:127896174..127898641,2	K562	blood:
4	chr4:127890829..127893804-chr4:127895608..127897503,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11098903	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11098904	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11936668	0.81[ASN][1000 genomes]
rs11938581	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12640034	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12641850	0.81[ASN][1000 genomes]
rs12642699	0.84[AMR][1000 genomes]
rs12642936	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12645504	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12646183	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12649338	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1397436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1567490	0.80[ASN][1000 genomes]
rs16997936	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17011663	0.84[AMR][1000 genomes]
rs17011712	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17011820	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011824	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011836	0.94[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011894	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17011898	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17011980	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17011996	0.91[ASN][1000 genomes]
rs17012000	0.91[ASN][1000 genomes]
rs17012020	0.81[ASN][1000 genomes]
rs17012036	0.81[ASN][1000 genomes]
rs17012038	0.81[ASN][1000 genomes]
rs2047858	0.84[AMR][1000 genomes]
rs2203012	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2391096	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28627370	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28721329	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36096326	0.80[ASN][1000 genomes]
rs56822169	0.81[ASN][1000 genomes]
rs57220017	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58011980	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58035425	0.81[AMR][1000 genomes]
rs60210181	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60662614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834341	0.81[ASN][1000 genomes]
rs9884714	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127891200-127898200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:127892600-127898600	Weak transcription	K562	blood
3	chr4:127895400-127897600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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