Variant report

Variant	rs28721329
Chromosome Location	chr4:127866993-127866994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10004199	0.91[AFR][1000 genomes]
rs10010455	0.84[AFR][1000 genomes]
rs10011774	0.91[AFR][1000 genomes]
rs10015453	0.91[AFR][1000 genomes]
rs10025698	0.87[AFR][1000 genomes]
rs10029556	0.86[AFR][1000 genomes]
rs10034583	0.97[AFR][1000 genomes]
rs10049997	0.94[AFR][1000 genomes]
rs11098903	0.86[EUR][1000 genomes]
rs11098904	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11938581	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11939679	0.90[AFR][1000 genomes]
rs11940406	0.90[AFR][1000 genomes]
rs12640034	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12642936	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12645504	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12646183	0.95[ASN][1000 genomes]
rs12649338	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1397436	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1510679	0.96[AFR][1000 genomes]
rs16997936	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16997962	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17011712	0.80[EUR][1000 genomes]
rs17011820	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17011824	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17011836	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17011862	0.96[AFR][1000 genomes]
rs17011894	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17011898	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17011980	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17011996	0.81[ASN][1000 genomes]
rs17012000	0.81[ASN][1000 genomes]
rs17012003	0.82[AFR][1000 genomes]
rs2203012	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2391096	0.86[EUR][1000 genomes]
rs2391125	0.95[AFR][1000 genomes]
rs28433391	0.84[AFR][1000 genomes]
rs28436662	0.82[AFR][1000 genomes]
rs28534874	0.98[AFR][1000 genomes]
rs28627370	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28644180	0.98[AFR][1000 genomes]
rs28649494	0.86[AFR][1000 genomes]
rs28652728	0.87[AFR][1000 genomes]
rs28673719	0.93[AFR][1000 genomes]
rs28688396	0.87[AFR][1000 genomes]
rs28707514	0.82[AFR][1000 genomes]
rs28784913	0.94[AFR][1000 genomes]
rs57220017	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58011980	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59500126	0.90[AFR][1000 genomes]
rs60210181	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60662614	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6818157	0.96[AFR][1000 genomes]
rs6838622	0.82[AFR][1000 genomes]
rs73848032	0.88[AFR][1000 genomes]
rs73848033	0.96[AFR][1000 genomes]
rs73848039	0.94[AFR][1000 genomes]
rs7656486	0.94[AFR][1000 genomes]
rs7665728	0.86[AFR][1000 genomes]
rs7681131	0.94[AFR][1000 genomes]
rs9307590	0.91[AFR][1000 genomes]
rs9307591	0.91[AFR][1000 genomes]
rs9884714	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127866600-127869600	Weak transcription	K562	blood

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