Variant report

Variant	rs17011712
Chromosome Location	chr4:127774428-127774429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10434047	1.00[ASN][1000 genomes]
rs11098903	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11098904	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11938581	0.80[EUR][1000 genomes]
rs12054615	0.83[ASN][1000 genomes]
rs12640034	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12641500	0.91[ASN][1000 genomes]
rs12642562	0.85[ASN][1000 genomes]
rs12642699	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12642936	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12645504	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12646183	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12648133	0.92[ASN][1000 genomes]
rs12649338	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12651411	0.92[ASN][1000 genomes]
rs13130797	0.83[ASN][1000 genomes]
rs1397436	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16997936	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16997962	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17011663	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17011713	0.91[ASN][1000 genomes]
rs17011820	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17011824	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17011836	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17011894	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17011898	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17011980	0.93[EUR][1000 genomes]
rs1910441	0.83[JPT][hapmap]
rs2047858	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2203012	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2391096	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28627370	0.80[EUR][1000 genomes]
rs28721329	0.80[EUR][1000 genomes]
rs56654496	0.81[ASN][1000 genomes]
rs57220017	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58011980	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58035425	0.97[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58743449	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60210181	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60595161	0.92[ASN][1000 genomes]
rs60662614	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60715791	0.92[ASN][1000 genomes]
rs61031744	0.82[ASN][1000 genomes]
rs61613462	0.82[ASN][1000 genomes]
rs7697724	0.92[JPT][hapmap]
rs9884714	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv879912	chr4:127706053-127775563	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127772800-127777800	Weak transcription	NHEK	skin
2	chr4:127772800-127792000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:127773000-127777200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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