Variant report

Variant	rs10434047
Chromosome Location	chr4:127773473-127773474
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:127716621..127718255-chr4:127771445..127774248,2	K562	blood:
2	chr4:127771990..127773680-chr4:127776900..127779323,2	K562	blood:
3	chr4:127771841..127773556-chr4:127876449..127879979,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12054615	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12641500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12642562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12642699	0.85[ASN][1000 genomes]
rs12648133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12651411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13130797	0.83[ASN][1000 genomes]
rs16997936	1.00[ASN][1000 genomes]
rs17011663	0.82[ASN][1000 genomes]
rs17011712	1.00[ASN][1000 genomes]
rs17011713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17011996	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17012000	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17012020	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17012036	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17012038	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17012040	0.82[AMR][1000 genomes]
rs1910441	0.83[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2047858	0.83[ASN][1000 genomes]
rs56654496	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56822169	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58035425	0.92[ASN][1000 genomes]
rs58743449	0.82[ASN][1000 genomes]
rs58838664	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60595161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60715791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61031744	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61613462	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7697724	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv879912	chr4:127706053-127775563	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127772800-127777800	Weak transcription	NHEK	skin
2	chr4:127772800-127792000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:127773000-127777200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:127773400-127773600	Enhancers	HSMM	muscle

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