Variant report

Variant	rs7656486
Chromosome Location	chr4:127827576-127827577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127825918..127828115-chr4:127829193..127830760,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10001724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10004199	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10010455	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10011774	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10015453	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10016117	0.81[YRI][hapmap]
rs10023546	0.88[YRI][hapmap]
rs10025698	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10029556	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10034583	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10049997	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11931739	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11938581	0.91[AFR][1000 genomes]
rs11939679	0.88[AFR][1000 genomes]
rs11940406	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1351427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1510679	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17011862	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17012003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2136813	1.00[EUR][1000 genomes]
rs2391125	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28433391	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28436662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28534874	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28627370	0.89[AFR][1000 genomes]
rs28644180	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28649494	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28652728	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28673719	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28688396	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28707514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28721329	0.94[AFR][1000 genomes]
rs28784913	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28852774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340445	1.00[EUR][1000 genomes]
rs340448	1.00[EUR][1000 genomes]
rs59500126	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6818157	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6829731	1.00[EUR][1000 genomes]
rs6838622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848032	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848033	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848039	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7665728	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7681131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9307590	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9307591	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs964825	1.00[EUR][1000 genomes]
rs9884714	0.92[AFR][1000 genomes]
rs9992535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127820600-127830000	Weak transcription	Fetal Brain Male	brain
2	chr4:127825400-127827600	Weak transcription	K562	blood
3	chr4:127827200-127828400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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