Variant report

Variant	rs2136813
Chromosome Location	chr4:127970798-127970799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10001724	1.00[EUR][1000 genomes]
rs10004199	1.00[EUR][1000 genomes]
rs10010455	1.00[EUR][1000 genomes]
rs10011774	1.00[EUR][1000 genomes]
rs10015453	1.00[EUR][1000 genomes]
rs10023546	0.85[MKK][hapmap];1.00[TSI][hapmap]
rs10025698	1.00[EUR][1000 genomes]
rs10029556	1.00[EUR][1000 genomes]
rs10034583	1.00[EUR][1000 genomes]
rs10049997	1.00[EUR][1000 genomes]
rs11931739	1.00[EUR][1000 genomes]
rs1351427	1.00[EUR][1000 genomes]
rs17011862	1.00[EUR][1000 genomes]
rs17012003	1.00[EUR][1000 genomes]
rs2136814	0.88[AFR][1000 genomes]
rs2391125	1.00[EUR][1000 genomes]
rs28433391	1.00[EUR][1000 genomes]
rs28436662	1.00[EUR][1000 genomes]
rs28534874	1.00[EUR][1000 genomes]
rs28644180	1.00[EUR][1000 genomes]
rs28649494	1.00[EUR][1000 genomes]
rs28652728	1.00[EUR][1000 genomes]
rs28673719	1.00[EUR][1000 genomes]
rs28688396	1.00[EUR][1000 genomes]
rs28707514	1.00[EUR][1000 genomes]
rs28784913	1.00[EUR][1000 genomes]
rs28852774	1.00[EUR][1000 genomes]
rs340445	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340448	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59500126	1.00[EUR][1000 genomes]
rs6818157	1.00[EUR][1000 genomes]
rs6824756	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6829731	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6838622	1.00[EUR][1000 genomes]
rs73848032	1.00[EUR][1000 genomes]
rs73848033	1.00[EUR][1000 genomes]
rs73848039	1.00[EUR][1000 genomes]
rs7656486	1.00[EUR][1000 genomes]
rs7665728	1.00[EUR][1000 genomes]
rs7681131	1.00[EUR][1000 genomes]
rs9307590	1.00[EUR][1000 genomes]
rs9307591	1.00[EUR][1000 genomes]
rs964825	1.00[EUR][1000 genomes]
rs9992535	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127965200-127970800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:127965800-127971200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr4:127966000-127971000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:127966600-127972800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:127967000-127976200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:127967600-127976600	Weak transcription	NHDF-Ad	bronchial
7	chr4:127967600-127982000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:127969400-127971200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:127969800-127971000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:127969800-127971200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr4:127969800-127971200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:127970200-127971000	Enhancers	NH-A	brain
13	chr4:127970200-127971400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr4:127970200-127976000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:127970200-127976600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:127970400-127971000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:127970600-127972600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links