Variant report

Variant	rs340445
Chromosome Location	chr4:127965000-127965001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127963640..127966390-chr4:127966752..127969246,2	K562	blood:
2	chr4:127957254..127959507-chr4:127962992..127965570,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MFSD8-5	chr4:127964585-127965089	XLOC_004066

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10001724	1.00[EUR][1000 genomes]
rs10004199	1.00[EUR][1000 genomes]
rs10010455	1.00[EUR][1000 genomes]
rs10011774	1.00[EUR][1000 genomes]
rs10015453	1.00[EUR][1000 genomes]
rs10023546	1.00[TSI][hapmap]
rs10025698	1.00[EUR][1000 genomes]
rs10029556	1.00[EUR][1000 genomes]
rs10034583	1.00[EUR][1000 genomes]
rs10049997	1.00[EUR][1000 genomes]
rs11931739	1.00[EUR][1000 genomes]
rs1351427	1.00[EUR][1000 genomes]
rs17011862	1.00[EUR][1000 genomes]
rs17012003	1.00[EUR][1000 genomes]
rs2136813	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2136814	0.86[AFR][1000 genomes]
rs2391125	1.00[EUR][1000 genomes]
rs28433391	1.00[EUR][1000 genomes]
rs28436662	1.00[EUR][1000 genomes]
rs28534874	1.00[EUR][1000 genomes]
rs28644180	1.00[EUR][1000 genomes]
rs28649494	1.00[EUR][1000 genomes]
rs28652728	1.00[EUR][1000 genomes]
rs28673719	1.00[EUR][1000 genomes]
rs28688396	1.00[EUR][1000 genomes]
rs28707514	1.00[EUR][1000 genomes]
rs28784913	1.00[EUR][1000 genomes]
rs28852774	1.00[EUR][1000 genomes]
rs340448	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59500126	1.00[EUR][1000 genomes]
rs6818157	1.00[EUR][1000 genomes]
rs6824756	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6829731	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6838622	1.00[EUR][1000 genomes]
rs73848032	1.00[EUR][1000 genomes]
rs73848033	1.00[EUR][1000 genomes]
rs73848039	1.00[EUR][1000 genomes]
rs7656486	1.00[EUR][1000 genomes]
rs7665728	1.00[EUR][1000 genomes]
rs7681131	1.00[EUR][1000 genomes]
rs9307590	1.00[EUR][1000 genomes]
rs9307591	1.00[EUR][1000 genomes]
rs964825	1.00[EUR][1000 genomes]
rs9992535	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127963200-127965200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr4:127964400-127965400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:127965000-127965200	Enhancers	H9 Cell Line	embryonic stem cell

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