Variant report

Variant	rs11931739
Chromosome Location	chr4:127938200-127938201
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10001724	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10004199	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10010455	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10011774	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10015453	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025698	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10029556	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10034583	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10049997	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11938581	0.87[AFR][1000 genomes]
rs11939679	0.84[AFR][1000 genomes]
rs1351427	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1510679	0.87[AMR][1000 genomes]
rs17011862	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17012003	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2136813	1.00[EUR][1000 genomes]
rs2391125	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28433391	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28436662	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28534874	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28627370	0.85[AFR][1000 genomes]
rs28644180	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28649494	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28652728	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28673719	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28688396	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28707514	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28784913	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28852774	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340445	1.00[EUR][1000 genomes]
rs340448	1.00[EUR][1000 genomes]
rs59500126	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6818157	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6829731	1.00[EUR][1000 genomes]
rs6838622	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848032	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848033	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848039	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7656486	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7665728	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7681026	0.87[AMR][1000 genomes]
rs7681131	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9307590	1.00[EUR][1000 genomes]
rs9307591	1.00[EUR][1000 genomes]
rs964825	1.00[EUR][1000 genomes]
rs9884714	0.86[AFR][1000 genomes]
rs9992535	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127938000-127938200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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