Variant report

Variant	rs964825
Chromosome Location	chr4:127878359-127878360
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:127699741..127703647-chr4:127875173..127879234,5	K562	blood:
2	chr4:127856559..127858565-chr4:127877156..127878946,3	K562	blood:
3	chr4:127655542..127661109-chr4:127874426..127880524,8	K562	blood:
4	chr4:127761821..127763813-chr4:127877198..127878709,2	K562	blood:
5	chr4:127846136..127847995-chr4:127877424..127879042,2	K562	blood:
6	chr4:127652170..127654874-chr4:127875964..127880032,4	K562	blood:
7	chr4:127875956..127880982-chr4:127903671..127906140,4	K562	blood:
8	chr4:127845036..127847636-chr4:127875844..127878924,3	K562	blood:
9	chr4:127642487..127645698-chr4:127876053..127878799,3	K562	blood:
10	chr4:127875427..127880054-chr4:127888874..127892075,5	K562	blood:
11	chr4:127836086..127837603-chr4:127876931..127879526,2	K562	blood:
12	chr4:127657779..127661019-chr4:127875846..127879215,3	K562	blood:
13	chr4:127876797..127878682-chr4:128046816..128049745,2	K562	blood:
14	chr4:127877293..127879243-chr4:127917275..127919666,3	K562	blood:
15	chr4:127878020..127880323-chr4:127908771..127910687,2	K562	blood:
16	chr4:127771841..127773556-chr4:127876449..127879979,3	K562	blood:
17	chr4:127875714..127878678-chr4:127910888..127914676,3	K562	blood:
18	chr4:127722324..127726396-chr4:127876150..127878934,3	K562	blood:
19	chr4:127694991..127697764-chr4:127874695..127878637,6	K562	blood:
20	chr4:127641934..127643987-chr4:127875955..127878799,2	K562	blood:
21	chr4:127654777..127657151-chr4:127876043..127879204,4	K562	blood:
22	chr4:127695739..127697770-chr4:127877137..127879165,2	K562	blood:
23	chr4:127834827..127837807-chr4:127876060..127878431,3	K562	blood:
24	chr4:127876070..127879293-chr4:127896514..127899164,4	K562	blood:

No data

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10001724	1.00[EUR][1000 genomes]
rs10004199	1.00[EUR][1000 genomes]
rs10010455	1.00[EUR][1000 genomes]
rs10011774	1.00[EUR][1000 genomes]
rs10015453	1.00[EUR][1000 genomes]
rs10025698	1.00[EUR][1000 genomes]
rs10029556	1.00[EUR][1000 genomes]
rs10034583	1.00[EUR][1000 genomes]
rs10049997	1.00[EUR][1000 genomes]
rs11931739	1.00[EUR][1000 genomes]
rs1351427	1.00[EUR][1000 genomes]
rs17011862	1.00[EUR][1000 genomes]
rs17012003	1.00[EUR][1000 genomes]
rs2136813	1.00[EUR][1000 genomes]
rs2391125	1.00[EUR][1000 genomes]
rs28433391	1.00[EUR][1000 genomes]
rs28436662	1.00[EUR][1000 genomes]
rs28534874	1.00[EUR][1000 genomes]
rs28644180	1.00[EUR][1000 genomes]
rs28649494	1.00[EUR][1000 genomes]
rs28652728	1.00[EUR][1000 genomes]
rs28673719	1.00[EUR][1000 genomes]
rs28688396	1.00[EUR][1000 genomes]
rs28707514	1.00[EUR][1000 genomes]
rs28784913	1.00[EUR][1000 genomes]
rs28852774	1.00[EUR][1000 genomes]
rs340445	1.00[EUR][1000 genomes]
rs340448	1.00[EUR][1000 genomes]
rs59500126	1.00[EUR][1000 genomes]
rs6818157	1.00[EUR][1000 genomes]
rs6829731	1.00[EUR][1000 genomes]
rs6838622	1.00[EUR][1000 genomes]
rs73848032	1.00[EUR][1000 genomes]
rs73848033	1.00[EUR][1000 genomes]
rs73848039	1.00[EUR][1000 genomes]
rs7656486	1.00[EUR][1000 genomes]
rs7665728	1.00[EUR][1000 genomes]
rs7681131	1.00[EUR][1000 genomes]
rs9307590	1.00[EUR][1000 genomes]
rs9307591	1.00[EUR][1000 genomes]
rs9992535	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127873000-127879600	Active TSS	K562	blood
2	chr4:127875600-127879000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:127876000-127879200	Weak transcription	Right Atrium	heart
4	chr4:127877800-127879000	Weak transcription	Fetal Lung	lung

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