Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10022263	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11936668	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12507548	0.83[ASN][1000 genomes]
rs12647371	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1397435	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1510683	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1567490	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17011980	0.80[ASN][1000 genomes]
rs17011996	0.81[ASN][1000 genomes]
rs17012000	0.81[ASN][1000 genomes]
rs2221773	0.80[EUR][1000 genomes]
rs28706560	0.84[EUR][1000 genomes]
rs28881307	0.87[EUR][1000 genomes]
rs28883271	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs36096326	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4834162	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6825686	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs6834341	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6839973	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6839976	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs965298	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127926600-127929200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:127927800-127929200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:127928000-127934000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr4:127928400-127929200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:127928600-127929200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:127928800-127929200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:127929000-127933600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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