Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127963640..127966390-chr4:127966752..127969246,2	K562	blood:
2	chr4:127957254..127959507-chr4:127962992..127965570,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MFSD8-5	chr4:127964585-127965089	XLOC_004066

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13141365	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397431	0.90[ASN][1000 genomes]
rs17011892	0.91[AMR][1000 genomes]
rs28373335	0.85[EUR][1000 genomes]
rs340439	1.00[ASN][1000 genomes]
rs340440	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340441	0.90[ASN][1000 genomes]
rs340446	0.90[ASN][1000 genomes]
rs340449	0.90[ASN][1000 genomes]
rs34261493	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34660635	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62333854	0.90[ASN][1000 genomes]
rs6825686	1.00[JPT][hapmap]
rs6840035	0.90[ASN][1000 genomes]
rs6853881	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7662706	1.00[JPT][hapmap]
rs7670859	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7673408	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7686658	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7700208	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs965298	1.00[JPT][hapmap];0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127963200-127965200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr4:127964400-127965400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:127965000-127965200	Enhancers	H9 Cell Line	embryonic stem cell

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