Variant report

Variant	rs28373335
Chromosome Location	chr4:127989863-127989864
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13141365	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13142099	0.85[EUR][1000 genomes]
rs1397431	0.90[ASN][1000 genomes]
rs340440	0.85[EUR][1000 genomes]
rs340441	0.90[ASN][1000 genomes]
rs340446	0.90[ASN][1000 genomes]
rs340449	0.90[ASN][1000 genomes]
rs34660635	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62333854	0.90[ASN][1000 genomes]
rs6840035	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7670859	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7673408	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7700208	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127989200-127991600	Enhancers	H1 Cell Line	embryonic stem cell
2	chr4:127989800-127991000	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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