Variant report

Variant	rs340441
Chromosome Location	chr4:127973615-127973616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13141365	0.90[ASN][1000 genomes]
rs13142099	0.90[ASN][1000 genomes]
rs1397431	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28373335	0.90[ASN][1000 genomes]
rs340439	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs340440	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs340446	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340449	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34660635	1.00[ASN][1000 genomes]
rs62333854	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825686	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6840035	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662706	1.00[JPT][hapmap]
rs7670859	0.90[ASN][1000 genomes]
rs7673408	1.00[ASN][1000 genomes]
rs7700208	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965298	1.00[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127967000-127976200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr4:127967600-127976600	Weak transcription	NHDF-Ad	bronchial
3	chr4:127967600-127982000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:127970200-127976000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:127970200-127976600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:127970800-127973800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:127971000-127976400	Weak transcription	NH-A	brain
8	chr4:127971400-127976200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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