Variant report

Variant	rs340440
Chromosome Location	chr4:127969219-127969220
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127963640..127966390-chr4:127966752..127969246,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13141365	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13142099	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397431	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28373335	0.85[EUR][1000 genomes]
rs340439	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs340441	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs340446	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs340449	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs34261493	0.85[ASN][1000 genomes]
rs34660635	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62333854	0.90[ASN][1000 genomes]
rs6825686	1.00[JPT][hapmap]
rs6840035	0.90[ASN][1000 genomes]
rs6853881	0.87[EUR][1000 genomes]
rs7662706	1.00[JPT][hapmap]
rs7670859	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7673408	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7686658	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7700208	0.90[ASN][1000 genomes]
rs965298	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127965200-127970800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:127965800-127971200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr4:127966000-127971000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:127966600-127972800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:127967000-127976200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:127967400-127969600	Weak transcription	NH-A	brain
7	chr4:127967400-127969800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:127967600-127969600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:127967600-127969800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:127967600-127970400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:127967600-127976600	Weak transcription	NHDF-Ad	bronchial
12	chr4:127967600-127982000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:127967800-127970200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr4:127968000-127969800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr4:127968400-127969400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr4:127968400-127970400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:127968800-127969400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr4:127968800-127969800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr4:127969000-127969400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:127969000-127969800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr4:127969200-127969400	Enhancers	NHLF	lung

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