Variant report

Variant	rs7664981
Chromosome Location	chr4:48426066-48426067
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10000288	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10001054	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10003458	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10004425	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10024547	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10517217	0.94[JPT][hapmap]
rs1055720	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1055721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10938530	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731199	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11737752	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12645951	0.94[YRI][hapmap]
rs13122065	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141335	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1472967	0.94[YRI][hapmap]
rs17609600	0.85[ASN][1000 genomes]
rs17655838	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1876834	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28411210	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28464394	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28636546	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28659782	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28690347	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs309890	0.88[JPT][hapmap]
rs404445	0.94[YRI][hapmap]
rs4413478	0.94[JPT][hapmap]
rs4695376	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4695382	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6447631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6447632	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66894522	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68142816	0.81[ASN][1000 genomes]
rs6816010	0.94[YRI][hapmap]
rs6841390	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6843652	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6848073	0.94[YRI][hapmap]
rs6853315	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7655066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7658851	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7662325	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7668401	0.94[JPT][hapmap]
rs7688310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7700141	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9884339	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992736	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9995939	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9999482	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7664981	SLAIN2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48372600-48426800	Weak transcription	Small Intestine	intestine
2	chr4:48382200-48431800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:48387600-48431400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:48391600-48434000	Weak transcription	Fetal Heart	heart
5	chr4:48400000-48431000	Weak transcription	Brain Angular Gyrus	brain
6	chr4:48400200-48426600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:48406200-48433200	Weak transcription	NHEK	skin
8	chr4:48413200-48427200	Weak transcription	Spleen	Spleen
9	chr4:48413200-48430000	Weak transcription	Aorta	Aorta
10	chr4:48413200-48431800	Weak transcription	Brain Substantia Nigra	brain
11	chr4:48413400-48431600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:48420600-48426600	Strong transcription	Primary T cells from cord blood	blood
13	chr4:48420800-48426200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr4:48420800-48427600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:48421000-48428400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr4:48421800-48426400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:48421800-48426400	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr4:48421800-48427000	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr4:48421800-48427000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:48421800-48428000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr4:48421800-48429400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:48422200-48426600	Strong transcription	Placenta	Placenta
23	chr4:48422600-48426400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:48422600-48431600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:48422600-48432000	Weak transcription	Psoas Muscle	Psoas
26	chr4:48422600-48433200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:48422600-48433600	Weak transcription	Esophagus	oesophagus
28	chr4:48422600-48434400	Weak transcription	Brain Germinal Matrix	brain
29	chr4:48423200-48433200	Weak transcription	Gastric	stomach
30	chr4:48423400-48438200	Weak transcription	Fetal Intestine Small	intestine
31	chr4:48423600-48426200	Strong transcription	Primary B cells from peripheral blood	blood
32	chr4:48423600-48428000	Strong transcription	HSMM	muscle
33	chr4:48423600-48433200	Weak transcription	Pancreas	Pancrea
34	chr4:48424200-48426600	Weak transcription	NHLF	lung
35	chr4:48424400-48430200	Weak transcription	Fetal Stomach	stomach
36	chr4:48424400-48432200	Weak transcription	Brain Hippocampus Middle	brain
37	chr4:48424400-48432400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr4:48424600-48432000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr4:48424800-48430400	Weak transcription	Colonic Mucosa	Colon
40	chr4:48425000-48429000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr4:48425000-48431000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr4:48425000-48431600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr4:48425000-48431800	Weak transcription	GM12878-XiMat	blood
44	chr4:48425000-48433200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr4:48425200-48426800	Weak transcription	Fetal Brain Male	brain
46	chr4:48425200-48426800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr4:48425200-48427400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr4:48425200-48427600	Weak transcription	Right Ventricle	heart
49	chr4:48425200-48429200	Weak transcription	Fetal Brain Female	brain
50	chr4:48425200-48429200	Weak transcription	Fetal Muscle Leg	muscle

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