Variant report

Variant	rs10024547
Chromosome Location	chr4:48467710-48467711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:48462803..48464644-chr4:48465855..48467881,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10000288	0.80[ASN][1000 genomes]
rs10001054	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10004425	0.83[ASN][1000 genomes]
rs10517217	0.95[JPT][hapmap]
rs1055720	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1055721	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10938530	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12645951	0.90[YRI][hapmap]
rs13105691	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13122065	0.86[ASN][1000 genomes]
rs13141335	0.85[ASN][1000 genomes]
rs13145421	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1472967	0.91[YRI][hapmap]
rs17655838	0.91[AFR][1000 genomes]
rs17655898	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28636546	0.85[ASN][1000 genomes]
rs28659782	0.86[ASN][1000 genomes]
rs28690347	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs309890	0.90[JPT][hapmap]
rs404445	0.90[YRI][hapmap]
rs4413478	0.85[JPT][hapmap]
rs4695376	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4695382	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4695383	0.84[ASN][1000 genomes]
rs6447631	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6447632	0.86[ASN][1000 genomes]
rs66894522	0.85[ASN][1000 genomes]
rs6816010	0.90[YRI][hapmap]
rs6841390	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6843652	0.86[ASN][1000 genomes]
rs6848073	0.91[YRI][hapmap]
rs6853315	0.80[ASN][1000 genomes]
rs7434434	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7441842	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7655066	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[ASN][1000 genomes]
rs7658851	0.83[ASN][1000 genomes]
rs7662325	0.91[AFR][1000 genomes]
rs7664981	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7668401	0.85[JPT][hapmap]
rs7688310	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.80[ASN][1000 genomes]
rs7700141	0.82[AFR][1000 genomes]
rs9884339	0.86[ASN][1000 genomes]
rs9992736	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9995939	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9999482	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470034	chr4:48427773-48605628	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv594121	chr4:48427773-48605628	Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv1005268	chr4:48444307-48484389	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv537086	chr4:48444307-48484389	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv829925	chr4:48467693-48639342	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48464400-48471600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr4:48467600-48467800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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