Variant report
Variant | rs17655898 |
---|---|
Chromosome Location | chr4:48468977-48468978 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10024547 | 0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs10031120 | 0.82[EUR][1000 genomes] |
rs10517217 | 0.86[JPT][hapmap] |
rs1055721 | 0.82[CHD][hapmap];0.90[JPT][hapmap] |
rs11934876 | 0.91[ASN][1000 genomes] |
rs13105691 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs13125511 | 0.82[EUR][1000 genomes] |
rs13145421 | 0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17655838 | 0.84[ASN][1000 genomes] |
rs309890 | 0.80[JPT][hapmap] |
rs4413478 | 0.80[CEU][hapmap];0.89[GIH][hapmap];0.82[EUR][1000 genomes] |
rs4695382 | 0.96[ASN][1000 genomes] |
rs4695383 | 0.96[ASN][1000 genomes] |
rs6447631 | 0.82[CHD][hapmap];0.90[JPT][hapmap] |
rs7434434 | 0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7441842 | 0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7655066 | 0.82[CHD][hapmap];0.90[JPT][hapmap] |
rs7662325 | 0.84[ASN][1000 genomes] |
rs7664981 | 0.94[JPT][hapmap] |
rs7668401 | 0.89[GIH][hapmap];0.86[MEX][hapmap] |
rs7688310 | 0.90[JPT][hapmap] |
rs7700141 | 0.91[ASN][1000 genomes] |
rs9992736 | 0.90[JPT][hapmap] |
rs9999482 | 0.90[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv470034 | chr4:48427773-48605628 | Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
2 | nsv594121 | chr4:48427773-48605628 | Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
3 | nsv1005268 | chr4:48444307-48484389 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
4 | nsv537086 | chr4:48444307-48484389 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
5 | nsv829925 | chr4:48467693-48639342 | Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:48464400-48471600 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
2 | chr4:48468600-48469800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |