Variant report

Variant	rs7664997
Chromosome Location	chr4:96224547-96224548
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11931375	0.91[AFR][1000 genomes]
rs11933141	0.84[AFR][1000 genomes]
rs1586165	0.92[YRI][hapmap]
rs17023534	0.92[YRI][hapmap]
rs35733261	0.93[AFR][1000 genomes]
rs7688007	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96201000-96226000	Weak transcription	Ovary	ovary
2	chr4:96211000-96225600	Weak transcription	Osteobl	bone
3	chr4:96211200-96225200	Weak transcription	HSMM	muscle
4	chr4:96216200-96225800	Weak transcription	Brain Angular Gyrus	brain
5	chr4:96218400-96226200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:96220400-96238800	Weak transcription	Aorta	Aorta
7	chr4:96220600-96225000	Weak transcription	Fetal Stomach	stomach
8	chr4:96221200-96226200	Weak transcription	Left Ventricle	heart
9	chr4:96221400-96224600	Weak transcription	Fetal Kidney	kidney
10	chr4:96221400-96225200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:96222000-96225200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:96222000-96226000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:96222200-96225800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:96222800-96225600	Enhancers	A549	lung
15	chr4:96223000-96226200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:96223000-96252400	Weak transcription	Fetal Lung	lung
17	chr4:96223200-96225600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:96223600-96224600	Enhancers	Brain Hippocampus Middle	brain
19	chr4:96223600-96224600	Enhancers	Brain Substantia Nigra	brain
20	chr4:96224000-96227000	Enhancers	Brain Anterior Caudate	brain
21	chr4:96224200-96225600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr4:96224200-96225800	Enhancers	Brain Cingulate Gyrus	brain
23	chr4:96224400-96224600	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr4:96224400-96224600	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr4:96224400-96227000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links