Variant report

Variant	rs7688007
Chromosome Location	chr4:96238832-96238833
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96238634..96240749-chr4:96243544..96245524,2	K562	blood:
2	chr4:96237471..96240020-chr4:99477884..99480366,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11933141	1.00[AMR][1000 genomes]
rs12651101	1.00[AMR][1000 genomes]
rs1586165	1.00[AMR][1000 genomes]
rs17023534	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs35733261	1.00[AMR][1000 genomes]
rs7664997	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96223000-96252400	Weak transcription	Fetal Lung	lung
2	chr4:96235600-96241000	Enhancers	Brain Substantia Nigra	brain
3	chr4:96236400-96240800	Enhancers	Brain Cingulate Gyrus	brain
4	chr4:96236800-96240600	Enhancers	Brain Angular Gyrus	brain
5	chr4:96237000-96241800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:96237400-96239200	Enhancers	Fetal Brain Male	brain
7	chr4:96237400-96240200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:96237400-96240200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr4:96237400-96240800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr4:96237600-96240600	Enhancers	Brain Anterior Caudate	brain
11	chr4:96237600-96240800	Enhancers	Brain Hippocampus Middle	brain
12	chr4:96238200-96239200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:96238200-96239600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:96238200-96240200	Enhancers	Fetal Stomach	stomach
15	chr4:96238200-96240400	Enhancers	Fetal Brain Female	brain
16	chr4:96238200-96241000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr4:96238400-96239000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr4:96238400-96239000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:96238400-96240600	Enhancers	Fetal Heart	heart
20	chr4:96238400-96241200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:96238600-96239000	Enhancers	Right Atrium	heart
22	chr4:96238800-96239600	Enhancers	Aorta	Aorta
23	chr4:96238800-96240000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr4:96238800-96240200	Enhancers	Brain Germinal Matrix	brain
25	chr4:96238800-96240400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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