Variant report

Variant	rs7668923
Chromosome Location	chr4:85401169-85401170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11721853	0.95[ASN][1000 genomes]
rs13150944	0.95[ASN][1000 genomes]
rs1444967	0.96[ASN][1000 genomes]
rs978936	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs978937	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7668923	C4orf22	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85400600-85401600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:85400800-85401200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr4:85400800-85401400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
4	chr4:85400800-85401400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
5	chr4:85400800-85401400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:85400800-85402000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr4:85401000-85401600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
8	chr4:85401000-85401800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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