Variant report

Variant	rs978937
Chromosome Location	chr4:85402467-85402468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:84827996..84828908-chr4:85401784..85402760,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NKX6-1-4	chr4:85400722-85402693	NONHSAT097239

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11721853	0.98[ASN][1000 genomes]
rs11726182	0.80[AFR][1000 genomes]
rs13150944	0.98[ASN][1000 genomes]
rs1444967	0.99[ASN][1000 genomes]
rs752402	0.80[AFR][1000 genomes]
rs7668923	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs978936	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85401400-85403400	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr4:85401600-85403400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:85402000-85402600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
4	chr4:85402000-85405000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
5	chr4:85402200-85402600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
6	chr4:85402200-85402800	Bivalent Enhancer	Fetal Intestine Large	intestine
7	chr4:85402200-85403600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
8	chr4:85402200-85403800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:85402400-85402600	Flanking Bivalent TSS/Enh	ES-WA7 Cell Line	embryonic stem cell
10	chr4:85402400-85402600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
11	chr4:85402400-85402600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:85402400-85402600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:85402400-85402600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
14	chr4:85402400-85402600	Bivalent Enhancer	Fetal Brain Female	brain
15	chr4:85402400-85402600	Bivalent/Poised TSS	Right Ventricle	heart
16	chr4:85402400-85402800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
17	chr4:85402400-85402800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
18	chr4:85402400-85402800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
19	chr4:85402400-85402800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
20	chr4:85402400-85402800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:85402400-85403200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
22	chr4:85402400-85403400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
23	chr4:85402400-85403400	Bivalent Enhancer	Fetal Intestine Small	intestine
24	chr4:85402400-85403800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
25	chr4:85402400-85404000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
26	chr4:85402400-85404000	Bivalent Enhancer	Liver	Liver
27	chr4:85402400-85404000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr4:85402400-85404200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
29	chr4:85402400-85404600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
30	chr4:85402400-85404800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
31	chr4:85402400-85405000	Bivalent Enhancer	Fetal Heart	heart
32	chr4:85402400-85405400	Bivalent Enhancer	Fetal Muscle Leg	muscle

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