Variant report

Variant	rs7670680
Chromosome Location	chr4:103652930-103652931
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103651533..103654531-chr4:103655303..103657953,2	K562	blood:
2	chr4:103650888..103653325-chr4:103747345..103748932,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224207	Chromatin interaction
ENSG00000109332	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17033093	0.82[ASW][hapmap]
rs17033248	1.00[CEU][hapmap]
rs17033351	1.00[ASW][hapmap];1.00[CEU][hapmap]
rs3974625	1.00[CEU][hapmap]
rs6811212	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs6827148	1.00[CEU][hapmap]
rs6847207	1.00[CEU][hapmap]
rs7668564	1.00[ASW][hapmap];1.00[CEU][hapmap]
rs7670621	1.00[CEU][hapmap]
rs7677366	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs7677599	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs7690706	1.00[CEU][hapmap]
rs7698383	1.00[ASW][hapmap];1.00[CEU][hapmap]
rs7699703	1.00[ASW][hapmap];1.00[CEU][hapmap]
rs9307278	1.00[ASW][hapmap];1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008110	chr4:103560583-103684526	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv966303	chr4:103649229-103653443	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103547000-103658200	Weak transcription	Small Intestine	intestine
2	chr4:103571800-103655800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:103581800-103681000	Weak transcription	Spleen	Spleen
4	chr4:103609600-103664800	Weak transcription	Esophagus	oesophagus
5	chr4:103618400-103655800	Weak transcription	HSMM	muscle
6	chr4:103627400-103655400	Weak transcription	Lung	lung
7	chr4:103630400-103655800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:103632400-103666200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:103632400-103667600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:103634400-103655400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:103634600-103653400	Weak transcription	Fetal Lung	lung
12	chr4:103634600-103655400	Weak transcription	NHDF-Ad	bronchial
13	chr4:103634600-103655600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr4:103634600-103655600	Weak transcription	NHLF	lung
15	chr4:103634800-103655800	Weak transcription	Osteobl	bone
16	chr4:103637000-103680800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr4:103638800-103681000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:103639000-103656000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr4:103639200-103659400	Weak transcription	Ovary	ovary
20	chr4:103639600-103655800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:103641000-103671600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr4:103641200-103653600	Weak transcription	HSMMtube	muscle
23	chr4:103641200-103656200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr4:103641200-103680800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr4:103641400-103657800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr4:103641400-103659400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr4:103644400-103655400	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr4:103644600-103658200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:103644800-103655600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:103644800-103658000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr4:103644800-103658000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:103645000-103653200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr4:103645000-103655200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:103645400-103657200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr4:103645400-103658200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr4:103647600-103670400	Weak transcription	Liver	Liver
37	chr4:103648800-103655800	Weak transcription	Right Atrium	heart
38	chr4:103650200-103658200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr4:103651000-103653800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
40	chr4:103651000-103654800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:103651000-103681000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:103651200-103653200	ZNF genes & repeats	Fetal Intestine Small	intestine
43	chr4:103651200-103653200	ZNF genes & repeats	Dnd41	blood
44	chr4:103651200-103653800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr4:103651200-103653800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:103651200-103656200	Weak transcription	Fetal Intestine Large	intestine
47	chr4:103651400-103653000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
48	chr4:103651400-103653000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
49	chr4:103651400-103653200	Weak transcription	Left Ventricle	heart
50	chr4:103651400-103653800	ZNF genes & repeats	GM12878-XiMat	blood

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