Variant report

Variant	rs6811212
Chromosome Location	chr4:103662776-103662777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10489108	1.00[CHB][hapmap]
rs17033210	1.00[CHB][hapmap]
rs17033222	1.00[CHB][hapmap]
rs17033248	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17033351	1.00[CEU][hapmap]
rs3974625	1.00[CEU][hapmap]
rs6827148	1.00[CEU][hapmap]
rs6847207	1.00[CEU][hapmap]
rs6857760	1.00[CHB][hapmap]
rs7668564	1.00[CEU][hapmap]
rs7670008	1.00[CHB][hapmap]
rs7670621	1.00[CEU][hapmap]
rs7670680	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs7677366	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs7677599	1.00[CEU][hapmap]
rs7690706	1.00[CEU][hapmap]
rs7698383	1.00[CEU][hapmap]
rs7699703	1.00[CEU][hapmap]
rs9307278	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008110	chr4:103560583-103684526	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103581800-103681000	Weak transcription	Spleen	Spleen
2	chr4:103609600-103664800	Weak transcription	Esophagus	oesophagus
3	chr4:103632400-103666200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:103632400-103667600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:103637000-103680800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:103638800-103681000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:103641000-103671600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr4:103641200-103680800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:103647600-103670400	Weak transcription	Liver	Liver
10	chr4:103651000-103681000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:103652000-103678800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:103652400-103665800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:103652800-103663600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:103653000-103680800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr4:103653600-103673200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr4:103656000-103678800	Weak transcription	Pancreas	Pancrea
17	chr4:103656000-103678800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr4:103656000-103680800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:103656400-103663400	Weak transcription	Aorta	Aorta
20	chr4:103656400-103673000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:103656400-103678800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:103656400-103678800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr4:103656400-103680400	Weak transcription	Thymus	Thymus
24	chr4:103656400-103680800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr4:103656400-103680800	Weak transcription	Adipose Nuclei	Adipose
26	chr4:103656600-103664000	Weak transcription	Fetal Thymus	thymus
27	chr4:103656600-103673200	Weak transcription	Right Atrium	heart
28	chr4:103656600-103674400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr4:103656600-103680200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr4:103657000-103680800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr4:103657200-103668800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:103657400-103663600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:103657400-103680600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr4:103657600-103663800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr4:103658000-103680800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:103658400-103663200	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr4:103658400-103678600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr4:103658400-103678800	Weak transcription	Small Intestine	intestine
39	chr4:103658600-103664600	Weak transcription	Gastric	stomach
40	chr4:103658600-103672000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:103658600-103675200	Weak transcription	A549	lung
42	chr4:103658600-103678800	Weak transcription	HMEC	breast
43	chr4:103658600-103681000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr4:103659200-103663000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr4:103659600-103664800	Weak transcription	Left Ventricle	heart
46	chr4:103659800-103663600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr4:103659800-103664000	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr4:103659800-103664600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr4:103659800-103669000	Weak transcription	Ovary	ovary
50	chr4:103659800-103678600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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