Variant report

Variant	rs17033210
Chromosome Location	chr4:103639840-103639841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103635927..103637891-chr4:103639365..103641236,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10489108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs17033222	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs17033248	1.00[CHB][hapmap]
rs6811212	1.00[CHB][hapmap]
rs6857760	1.00[CHB][hapmap]
rs7670008	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008110	chr4:103560583-103684526	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1013963	chr4:103606672-103645082	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103547000-103658200	Weak transcription	Small Intestine	intestine
2	chr4:103553000-103651400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:103553400-103651400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:103556200-103650400	Weak transcription	Pancreas	Pancrea
5	chr4:103571800-103655800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:103572000-103640800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr4:103580000-103644000	Weak transcription	Aorta	Aorta
8	chr4:103580400-103640600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr4:103581800-103681000	Weak transcription	Spleen	Spleen
10	chr4:103586000-103640600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr4:103596200-103640600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr4:103608800-103644600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr4:103609200-103644000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr4:103609600-103640200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:103609600-103664800	Weak transcription	Esophagus	oesophagus
16	chr4:103610000-103640600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:103612000-103644000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr4:103617000-103640200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr4:103618400-103655800	Weak transcription	HSMM	muscle
20	chr4:103622600-103643000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr4:103627000-103644200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:103627000-103650000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr4:103627400-103649800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr4:103627400-103650200	Weak transcription	Fetal Stomach	stomach
25	chr4:103627400-103650200	Weak transcription	Gastric	stomach
26	chr4:103627400-103650200	Weak transcription	Thymus	Thymus
27	chr4:103627400-103651000	Weak transcription	Right Ventricle	heart
28	chr4:103627400-103655400	Weak transcription	Lung	lung
29	chr4:103627600-103648600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr4:103627600-103652400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr4:103628600-103640800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr4:103628800-103640800	Weak transcription	Dnd41	blood
33	chr4:103629800-103640600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr4:103629800-103644800	Weak transcription	Brain Substantia Nigra	brain
35	chr4:103630000-103644000	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr4:103630400-103655800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr4:103631400-103640400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr4:103632000-103642000	Weak transcription	Brain Germinal Matrix	brain
39	chr4:103632400-103640800	Weak transcription	K562	blood
40	chr4:103632400-103647800	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr4:103632400-103666200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr4:103632400-103667600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr4:103632600-103640000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr4:103632800-103645400	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr4:103632800-103651000	Weak transcription	Fetal Brain Female	brain
46	chr4:103633000-103647000	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr4:103633200-103640400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr4:103634000-103642600	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr4:103634000-103647200	Strong transcription	Primary B cells from peripheral blood	blood
50	chr4:103634000-103650200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links