Variant report

Variant	rs17033222
Chromosome Location	chr4:103642090-103642091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10489108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs17033210	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs17033248	1.00[CHB][hapmap]
rs6811212	1.00[CHB][hapmap]
rs6857760	1.00[CHB][hapmap]
rs7670008	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008110	chr4:103560583-103684526	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1013963	chr4:103606672-103645082	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103547000-103658200	Weak transcription	Small Intestine	intestine
2	chr4:103553000-103651400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:103553400-103651400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:103556200-103650400	Weak transcription	Pancreas	Pancrea
5	chr4:103571800-103655800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:103580000-103644000	Weak transcription	Aorta	Aorta
7	chr4:103581800-103681000	Weak transcription	Spleen	Spleen
8	chr4:103608800-103644600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr4:103609200-103644000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:103609600-103664800	Weak transcription	Esophagus	oesophagus
11	chr4:103612000-103644000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr4:103618400-103655800	Weak transcription	HSMM	muscle
13	chr4:103622600-103643000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr4:103627000-103644200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr4:103627000-103650000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:103627400-103649800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr4:103627400-103650200	Weak transcription	Fetal Stomach	stomach
18	chr4:103627400-103650200	Weak transcription	Gastric	stomach
19	chr4:103627400-103650200	Weak transcription	Thymus	Thymus
20	chr4:103627400-103651000	Weak transcription	Right Ventricle	heart
21	chr4:103627400-103655400	Weak transcription	Lung	lung
22	chr4:103627600-103648600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr4:103627600-103652400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr4:103629800-103644800	Weak transcription	Brain Substantia Nigra	brain
25	chr4:103630000-103644000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr4:103630400-103655800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr4:103632400-103647800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr4:103632400-103666200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr4:103632400-103667600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr4:103632800-103645400	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr4:103632800-103651000	Weak transcription	Fetal Brain Female	brain
32	chr4:103633000-103647000	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr4:103634000-103642600	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr4:103634000-103647200	Strong transcription	Primary B cells from peripheral blood	blood
35	chr4:103634000-103650200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:103634000-103650400	Weak transcription	Brain Angular Gyrus	brain
37	chr4:103634400-103644000	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr4:103634400-103655400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr4:103634600-103644000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr4:103634600-103644000	Weak transcription	Brain Hippocampus Middle	brain
41	chr4:103634600-103650200	Weak transcription	Fetal Intestine Large	intestine
42	chr4:103634600-103653400	Weak transcription	Fetal Lung	lung
43	chr4:103634600-103655400	Weak transcription	NHDF-Ad	bronchial
44	chr4:103634600-103655600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr4:103634600-103655600	Weak transcription	NHLF	lung
46	chr4:103634800-103644200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr4:103634800-103655800	Weak transcription	Osteobl	bone
48	chr4:103635400-103644400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr4:103635800-103644400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr4:103636000-103652400	Weak transcription	Colon Smooth Muscle	Colon

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