Variant report

Variant	rs7670008
Chromosome Location	chr4:103675586-103675587
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103672283..103676348-chr4:103679508..103682338,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109323	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10489108	1.00[CHB][hapmap]
rs17033210	1.00[CHB][hapmap]
rs17033222	1.00[CHB][hapmap]
rs17033248	1.00[CHB][hapmap]
rs6811212	1.00[CHB][hapmap]
rs6857760	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008110	chr4:103560583-103684526	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103581800-103681000	Weak transcription	Spleen	Spleen
2	chr4:103637000-103680800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr4:103638800-103681000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:103641200-103680800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:103651000-103681000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:103652000-103678800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:103653000-103680800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:103656000-103678800	Weak transcription	Pancreas	Pancrea
9	chr4:103656000-103678800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:103656000-103680800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:103656400-103678800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:103656400-103678800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:103656400-103680400	Weak transcription	Thymus	Thymus
14	chr4:103656400-103680800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr4:103656400-103680800	Weak transcription	Adipose Nuclei	Adipose
16	chr4:103656600-103680200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:103657000-103680800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:103657400-103680600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr4:103658000-103680800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:103658400-103678600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr4:103658400-103678800	Weak transcription	Small Intestine	intestine
22	chr4:103658600-103678800	Weak transcription	HMEC	breast
23	chr4:103658600-103681000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr4:103659800-103678600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr4:103659800-103678800	Weak transcription	Right Ventricle	heart
26	chr4:103659800-103679000	Weak transcription	Lung	lung
27	chr4:103659800-103680800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr4:103661000-103680800	Weak transcription	Fetal Lung	lung
29	chr4:103662000-103680600	Weak transcription	Brain Hippocampus Middle	brain
30	chr4:103662600-103680400	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr4:103662800-103680800	Weak transcription	Primary T cells from cord blood	blood
32	chr4:103663000-103678800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr4:103663200-103678600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr4:103663400-103681000	Weak transcription	Fetal Muscle Leg	muscle
35	chr4:103664200-103681000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:103664200-103681000	Weak transcription	Aorta	Aorta
37	chr4:103665200-103678200	Weak transcription	Left Ventricle	heart
38	chr4:103665200-103678800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr4:103665200-103678800	Weak transcription	Gastric	stomach
40	chr4:103665400-103678600	Weak transcription	Fetal Intestine Small	intestine
41	chr4:103665600-103676400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr4:103665800-103681000	Weak transcription	Fetal Brain Female	brain
43	chr4:103666400-103680400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr4:103666600-103680800	Weak transcription	NHLF	lung
45	chr4:103667000-103679200	Weak transcription	Dnd41	blood
46	chr4:103667000-103680600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr4:103667800-103680800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr4:103668200-103680600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr4:103668200-103680800	Weak transcription	Brain Angular Gyrus	brain
50	chr4:103668600-103680600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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