Variant report

Variant	rs767092
Chromosome Location	chr4:15509291-15509292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16892092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16892095	0.85[JPT][hapmap]
rs16892104	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16892107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16892112	0.85[JPT][hapmap]
rs17476642	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs4698113	1.00[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4698390	0.85[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4698392	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6449142	0.84[CHB][hapmap]
rs6811203	0.84[CHB][hapmap]
rs73235024	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73235027	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73235032	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73237154	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15481600-15519000	Weak transcription	Gastric	stomach
2	chr4:15482200-15519800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:15482600-15516600	Weak transcription	Brain Angular Gyrus	brain
4	chr4:15482600-15526400	Weak transcription	HMEC	breast
5	chr4:15482800-15518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:15487400-15570400	Weak transcription	Psoas Muscle	Psoas
7	chr4:15490400-15519400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:15490400-15539600	Weak transcription	Esophagus	oesophagus
9	chr4:15490600-15510600	Weak transcription	Aorta	Aorta
10	chr4:15490600-15519000	Weak transcription	A549	lung
11	chr4:15491600-15511400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:15491800-15516400	Weak transcription	NHLF	lung
13	chr4:15492200-15511000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:15495600-15559400	Weak transcription	HSMMtube	muscle
15	chr4:15496000-15512800	Weak transcription	Colon Smooth Muscle	Colon
16	chr4:15498200-15538400	Weak transcription	Fetal Heart	heart
17	chr4:15499000-15512800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr4:15499000-15518200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:15499200-15512200	Weak transcription	Brain Anterior Caudate	brain
20	chr4:15499200-15515800	Weak transcription	Liver	Liver
21	chr4:15499600-15516600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr4:15499600-15528400	Weak transcription	Pancreas	Pancrea
23	chr4:15500200-15516800	Weak transcription	Brain Germinal Matrix	brain
24	chr4:15500400-15523200	Weak transcription	NHEK	skin
25	chr4:15501400-15511400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:15501400-15525400	Strong transcription	Stomach Smooth Muscle	stomach
27	chr4:15501600-15519000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr4:15502000-15539400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:15502200-15512400	Weak transcription	Brain Hippocampus Middle	brain
30	chr4:15502400-15525600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr4:15502400-15539400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr4:15502800-15517600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr4:15502800-15549200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr4:15502800-15577600	Weak transcription	Right Ventricle	heart
35	chr4:15503400-15511000	Weak transcription	HUVEC	blood vessel
36	chr4:15503400-15516800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr4:15503600-15514400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:15503800-15512800	Weak transcription	Lung	lung
39	chr4:15503800-15519000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr4:15504000-15517600	Weak transcription	Brain Substantia Nigra	brain
41	chr4:15504000-15518800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr4:15504400-15512200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr4:15504400-15519000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr4:15504400-15526800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr4:15504600-15509800	Weak transcription	HSMM	muscle
46	chr4:15504600-15510000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr4:15504800-15509800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr4:15505000-15510600	Weak transcription	Fetal Intestine Small	intestine
49	chr4:15505400-15509800	Weak transcription	Ovary	ovary
50	chr4:15505400-15516400	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links