Variant report

Variant	rs16892095
Chromosome Location	chr4:15518357-15518358
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16892051	0.87[CHB][hapmap];1.00[GIH][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs16892054	0.93[CHB][hapmap];1.00[GIH][hapmap];0.85[ASN][1000 genomes]
rs16892063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16892092	0.85[JPT][hapmap]
rs16892104	0.85[JPT][hapmap]
rs16892112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892131	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4698389	0.87[CHB][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs4698390	0.80[JPT][hapmap]
rs4698396	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4698397	1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[LWK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73235015	0.85[ASN][1000 genomes]
rs73235019	0.93[ASN][1000 genomes]
rs73235029	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73235033	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73237156	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73237160	0.89[AFR][1000 genomes]
rs767092	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15481600-15519000	Weak transcription	Gastric	stomach
2	chr4:15482200-15519800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:15482600-15526400	Weak transcription	HMEC	breast
4	chr4:15487400-15570400	Weak transcription	Psoas Muscle	Psoas
5	chr4:15490400-15519400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:15490400-15539600	Weak transcription	Esophagus	oesophagus
7	chr4:15490600-15519000	Weak transcription	A549	lung
8	chr4:15495600-15559400	Weak transcription	HSMMtube	muscle
9	chr4:15498200-15538400	Weak transcription	Fetal Heart	heart
10	chr4:15499600-15528400	Weak transcription	Pancreas	Pancrea
11	chr4:15500400-15523200	Weak transcription	NHEK	skin
12	chr4:15501400-15525400	Strong transcription	Stomach Smooth Muscle	stomach
13	chr4:15501600-15519000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:15502000-15539400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:15502400-15525600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:15502400-15539400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr4:15502800-15549200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr4:15502800-15577600	Weak transcription	Right Ventricle	heart
19	chr4:15503800-15519000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr4:15504000-15518800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:15504400-15519000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr4:15504400-15526800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr4:15507600-15538200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr4:15508200-15538600	Weak transcription	Primary T cells from cord blood	blood
25	chr4:15508200-15556400	Weak transcription	Colonic Mucosa	Colon
26	chr4:15508400-15518800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr4:15508400-15530000	Weak transcription	NHDF-Ad	bronchial
28	chr4:15508400-15530400	Weak transcription	NH-A	brain
29	chr4:15508800-15545800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr4:15509200-15564400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr4:15509600-15553400	Weak transcription	HepG2	liver
32	chr4:15509800-15521400	Weak transcription	Hela-S3	cervix
33	chr4:15510600-15519000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr4:15511600-15521800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr4:15511800-15520000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:15512000-15518800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr4:15512000-15580000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr4:15512200-15519200	Weak transcription	Fetal Intestine Small	intestine
39	chr4:15512800-15520600	Strong transcription	Fetal Muscle Trunk	muscle
40	chr4:15513000-15562400	Weak transcription	Primary B cells from cord blood	blood
41	chr4:15513200-15518800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr4:15513200-15519000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr4:15513600-15518800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr4:15513600-15519000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr4:15513800-15519000	Weak transcription	Brain Hippocampus Middle	brain
46	chr4:15513800-15538400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr4:15514200-15522200	Weak transcription	HSMM	muscle
48	chr4:15515000-15520200	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr4:15515400-15520000	Weak transcription	Aorta	Aorta
50	chr4:15515400-15545200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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