Variant report

Variant	rs16892131
Chromosome Location	chr4:15539202-15539203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16892051	0.87[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];1.00[YRI][hapmap]
rs16892054	0.94[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap]
rs16892063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16892095	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs16892112	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4698389	0.87[CHB][hapmap];1.00[YRI][hapmap]
rs4698396	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4698397	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[LWK][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73235029	0.82[AFR][1000 genomes]
rs73235033	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73237156	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73237160	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15487400-15570400	Weak transcription	Psoas Muscle	Psoas
2	chr4:15490400-15539600	Weak transcription	Esophagus	oesophagus
3	chr4:15495600-15559400	Weak transcription	HSMMtube	muscle
4	chr4:15502000-15539400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:15502400-15539400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr4:15502800-15549200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr4:15502800-15577600	Weak transcription	Right Ventricle	heart
8	chr4:15508200-15556400	Weak transcription	Colonic Mucosa	Colon
9	chr4:15508800-15545800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:15509200-15564400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:15509600-15553400	Weak transcription	HepG2	liver
12	chr4:15512000-15580000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr4:15513000-15562400	Weak transcription	Primary B cells from cord blood	blood
14	chr4:15515400-15545200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:15516000-15545600	Weak transcription	Fetal Thymus	thymus
16	chr4:15517800-15551600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr4:15517800-15593600	Weak transcription	HUVEC	blood vessel
18	chr4:15519400-15539600	Weak transcription	Gastric	stomach
19	chr4:15519800-15539600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr4:15520000-15572400	Weak transcription	Small Intestine	intestine
21	chr4:15520400-15544200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr4:15520600-15539400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr4:15520600-15544400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr4:15520600-15544600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr4:15520600-15545200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr4:15520600-15553400	Weak transcription	A549	lung
27	chr4:15520800-15539800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr4:15520800-15545000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr4:15521800-15539600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr4:15522200-15544600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr4:15526000-15558200	Weak transcription	Spleen	Spleen
32	chr4:15527600-15539600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr4:15527800-15539400	Weak transcription	HMEC	breast
34	chr4:15530200-15556600	Weak transcription	HSMM	muscle
35	chr4:15530600-15540000	Weak transcription	NHDF-Ad	bronchial
36	chr4:15530800-15539400	Weak transcription	Osteobl	bone
37	chr4:15530800-15554600	Weak transcription	Placenta	Placenta
38	chr4:15530800-15554600	Weak transcription	NH-A	brain
39	chr4:15531000-15539600	Weak transcription	Aorta	Aorta
40	chr4:15531000-15539800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:15531200-15539400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr4:15531200-15539400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr4:15531200-15545200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr4:15531600-15548600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr4:15533000-15554800	Weak transcription	Fetal Brain Male	brain
46	chr4:15537000-15540400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr4:15537200-15540200	Strong transcription	Brain Hippocampus Middle	brain
48	chr4:15537200-15565000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr4:15537400-15540400	Strong transcription	Adipose Nuclei	Adipose
50	chr4:15537400-15540400	Strong transcription	Fetal Kidney	kidney

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