Variant report

Variant	rs73235033
Chromosome Location	chr4:15527043-15527044
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr4:15526731-15527056	ECC-1	luminal epithelium:	n/a	n/a
2	TEAD4	chr4:15526650-15527223	ECC-1	luminal epithelium:	n/a	n/a
3	FOS	chr4:15526721-15527070	MCF10A-Er-Src	breast:	n/a	n/a
4	MAX	chr4:15526638-15527096	ECC-1	luminal epithelium:	n/a	n/a
5	FOS	chr4:15526675-15527066	MCF10A-Er-Src	breast:	n/a	n/a
6	SP1	chr4:15526643-15527229	HCT-116	colon:	n/a	n/a
7	FOS	chr4:15526763-15527063	MCF10A-Er-Src	breast:	n/a	n/a
8	TEAD4	chr4:15526637-15527118	ECC-1	luminal epithelium:	n/a	n/a
9	YY1	chr4:15526688-15527079	ECC-1	luminal epithelium:	n/a	n/a
10	EP300	chr4:15526580-15527171	ECC-1	luminal epithelium:	n/a	chr4:15527141-15527155
11	MYC	chr4:15526732-15527045	MCF10A-Er-Src	breast:	n/a	n/a
12	FOS	chr4:15526719-15527079	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
CC2D2A	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16892051	0.93[ASN][1000 genomes]
rs16892054	0.93[ASN][1000 genomes]
rs16892063	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16892095	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16892112	0.91[ASN][1000 genomes]
rs16892131	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4698389	0.90[ASN][1000 genomes]
rs4698396	0.88[AFR][1000 genomes]
rs4698397	0.88[AFR][1000 genomes]
rs73235015	0.93[ASN][1000 genomes]
rs73235019	0.84[ASN][1000 genomes]
rs73235029	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73237156	0.88[AFR][1000 genomes]
rs73237160	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15487400-15570400	Weak transcription	Psoas Muscle	Psoas
2	chr4:15490400-15539600	Weak transcription	Esophagus	oesophagus
3	chr4:15495600-15559400	Weak transcription	HSMMtube	muscle
4	chr4:15498200-15538400	Weak transcription	Fetal Heart	heart
5	chr4:15499600-15528400	Weak transcription	Pancreas	Pancrea
6	chr4:15502000-15539400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:15502400-15539400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:15502800-15549200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:15502800-15577600	Weak transcription	Right Ventricle	heart
10	chr4:15507600-15538200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:15508200-15538600	Weak transcription	Primary T cells from cord blood	blood
12	chr4:15508200-15556400	Weak transcription	Colonic Mucosa	Colon
13	chr4:15508400-15530000	Weak transcription	NHDF-Ad	bronchial
14	chr4:15508400-15530400	Weak transcription	NH-A	brain
15	chr4:15508800-15545800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:15509200-15564400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:15509600-15553400	Weak transcription	HepG2	liver
18	chr4:15512000-15580000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr4:15513000-15562400	Weak transcription	Primary B cells from cord blood	blood
20	chr4:15513800-15538400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:15515400-15545200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:15516000-15545600	Weak transcription	Fetal Thymus	thymus
23	chr4:15516200-15538000	Weak transcription	Liver	Liver
24	chr4:15517200-15530400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr4:15517200-15538600	Weak transcription	Brain Angular Gyrus	brain
26	chr4:15517800-15551600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr4:15517800-15593600	Weak transcription	HUVEC	blood vessel
28	chr4:15518400-15529000	Weak transcription	Placenta	Placenta
29	chr4:15519400-15529200	Weak transcription	Fetal Brain Male	brain
30	chr4:15519400-15538600	Weak transcription	Brain Substantia Nigra	brain
31	chr4:15519400-15539600	Weak transcription	Gastric	stomach
32	chr4:15519800-15539600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr4:15520000-15572400	Weak transcription	Small Intestine	intestine
34	chr4:15520400-15529000	Weak transcription	Adipose Nuclei	Adipose
35	chr4:15520400-15532200	Weak transcription	Lung	lung
36	chr4:15520400-15538600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr4:15520400-15539000	Weak transcription	NHLF	lung
38	chr4:15520400-15544200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr4:15520600-15532400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr4:15520600-15534400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:15520600-15538200	Weak transcription	Ovary	ovary
42	chr4:15520600-15538600	Weak transcription	Brain Anterior Caudate	brain
43	chr4:15520600-15538600	Weak transcription	Fetal Intestine Small	intestine
44	chr4:15520600-15539200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr4:15520600-15539400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr4:15520600-15544400	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr4:15520600-15544600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr4:15520600-15545200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr4:15520600-15553400	Weak transcription	A549	lung
50	chr4:15520800-15529800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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