Variant report

Variant	rs7671793
Chromosome Location	chr4:92154401-92154402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11933973	1.00[CHB][hapmap];0.81[GIH][hapmap]
rs11934099	1.00[CHB][hapmap]
rs11942800	1.00[CHB][hapmap]
rs17018422	1.00[CHB][hapmap]
rs17018453	1.00[CHB][hapmap]
rs62310742	1.00[ASN][1000 genomes]
rs62310743	1.00[ASN][1000 genomes]
rs62310744	1.00[ASN][1000 genomes]
rs62310746	1.00[ASN][1000 genomes]
rs62311962	1.00[ASN][1000 genomes]
rs72875110	1.00[ASN][1000 genomes]
rs72875137	1.00[ASN][1000 genomes]
rs72875138	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv869023	chr4:91940838-92935383	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3448147	chr4:92011533-92275731	Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv879564	chr4:92033255-92184080	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3384271	chr4:92073391-92464275	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv879565	chr4:92142966-92251839	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:92154000-92154600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:92154000-92154800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr4:92154200-92154800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:92154200-92154800	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr4:92154200-92155400	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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