Variant report

Variant	rs7674825
Chromosome Location	chr4:77892042-77892043
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77886236..77888366-chr4:77888596..77892615,3	K562	blood:
2	chr4:77882826..77885713-chr4:77891528..77894095,3	K562	blood:
3	chr4:77889376..77894977-chr4:77900561..77905998,5	MCF-7	breast:
4	chr4:77869455..77872220-chr4:77889875..77892790,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138758	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11940434	0.84[ASN][1000 genomes]
rs11947360	0.81[ASN][1000 genomes]
rs17262520	0.84[ASN][1000 genomes]
rs4150031	1.00[AFR][1000 genomes]
rs4150044	1.00[AFR][1000 genomes]
rs4150067	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1810313	chr4:77778670-77902099	Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77872600-77894400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:77872600-77899200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr4:77872600-77900400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:77873000-77899200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:77873400-77894200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:77873400-77894400	Weak transcription	NHEK	skin
7	chr4:77876000-77895200	Weak transcription	Aorta	Aorta
8	chr4:77876600-77895400	Weak transcription	Right Atrium	heart
9	chr4:77876800-77906000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:77878800-77899200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:77879000-77893600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:77879000-77894400	Weak transcription	Fetal Stomach	stomach
13	chr4:77879000-77898400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:77879600-77893400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:77879600-77894200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:77879600-77904200	Weak transcription	Gastric	stomach
17	chr4:77881600-77899200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr4:77882200-77893000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr4:77882200-77905200	Weak transcription	Fetal Intestine Large	intestine
20	chr4:77882400-77893400	Weak transcription	NH-A	brain
21	chr4:77884200-77893200	Weak transcription	NHLF	lung
22	chr4:77884200-77894400	Weak transcription	Fetal Intestine Small	intestine
23	chr4:77884600-77893200	Weak transcription	Fetal Brain Male	brain
24	chr4:77884600-77893600	Weak transcription	Fetal Lung	lung
25	chr4:77884800-77893600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:77884800-77899200	Weak transcription	Placenta	Placenta
27	chr4:77884800-77899200	Weak transcription	Small Intestine	intestine
28	chr4:77884800-77904200	Weak transcription	Pancreas	Pancrea
29	chr4:77886000-77893000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr4:77886000-77893200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr4:77886000-77895000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr4:77886200-77895000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr4:77886200-77898200	Weak transcription	Primary T cells from cord blood	blood
34	chr4:77886200-77898200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr4:77886200-77899200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr4:77886400-77898400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr4:77886600-77892200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr4:77886800-77894200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr4:77887600-77898400	Weak transcription	HMEC	breast
40	chr4:77887600-77899200	Weak transcription	Brain Anterior Caudate	brain
41	chr4:77888000-77895200	Weak transcription	Psoas Muscle	Psoas
42	chr4:77888000-77899400	Weak transcription	Lung	lung
43	chr4:77888400-77894400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr4:77888800-77893000	Weak transcription	GM12878-XiMat	blood
45	chr4:77889600-77892200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr4:77889600-77893200	Weak transcription	HSMMtube	muscle
47	chr4:77889800-77892200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:77889800-77892400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr4:77890000-77894000	Enhancers	Fetal Kidney	kidney
50	chr4:77890200-77892200	Enhancers	HUES64 Cell Line	embryonic stem cell

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