Variant report

Variant	rs4150067
Chromosome Location	chr4:78082382-78082383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77994107..77999899-chr4:78076204..78082875,32	MCF-7	breast:
2	chr4:78053146..78055280-chr4:78080345..78082890,2	K562	blood:
3	chr4:77994543..78000148-chr4:78076403..78082799,9	K562	blood:

Variant related genes	Relation type
ENSG00000118816	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13108325	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13115931	0.95[EUR][1000 genomes]
rs13134753	0.87[ASN][1000 genomes]
rs17397736	0.95[EUR][1000 genomes]
rs17397972	0.95[EUR][1000 genomes]
rs17398028	0.95[EUR][1000 genomes]
rs34171188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34623364	0.95[EUR][1000 genomes]
rs34757592	0.95[EUR][1000 genomes]
rs34820788	1.00[ASN][1000 genomes]
rs35974904	0.93[ASN][1000 genomes]
rs36045205	0.95[EUR][1000 genomes]
rs4150031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4150044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4150052	1.00[ASN][1000 genomes]
rs4150084	1.00[ASN][1000 genomes]
rs4150090	1.00[ASN][1000 genomes]
rs59493111	0.86[ASN][1000 genomes]
rs6816591	0.95[EUR][1000 genomes]
rs6822060	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71607401	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71609303	1.00[ASN][1000 genomes]
rs729239	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs729241	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7655142	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7657629	0.86[ASN][1000 genomes]
rs7659891	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7674825	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78079800-78082400	Weak transcription	Pancreas	Pancrea
2	chr4:78079800-78083000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr4:78079800-78083000	Weak transcription	Spleen	Spleen
4	chr4:78079800-78083800	Weak transcription	Left Ventricle	heart
5	chr4:78079800-78086000	Weak transcription	Stomach Mucosa	stomach
6	chr4:78080000-78082400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:78080000-78082400	Weak transcription	Gastric	stomach
8	chr4:78080000-78083000	Weak transcription	Brain Angular Gyrus	brain
9	chr4:78080000-78083000	Weak transcription	Colonic Mucosa	Colon
10	chr4:78080000-78083600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:78080000-78083600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr4:78080000-78084400	Weak transcription	Ovary	ovary
13	chr4:78080000-78085000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr4:78080000-78085200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr4:78080000-78086800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr4:78080000-78087400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr4:78080000-78089800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr4:78080000-78092800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr4:78080000-78093400	Weak transcription	Right Ventricle	heart
20	chr4:78080200-78083000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:78080200-78083000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:78080200-78083000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr4:78080200-78083000	Weak transcription	Colon Smooth Muscle	Colon
24	chr4:78080200-78083000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr4:78080200-78083000	Weak transcription	Lung	lung
26	chr4:78080200-78084200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr4:78080200-78085200	Weak transcription	K562	blood
28	chr4:78080200-78086200	Strong transcription	Fetal Stomach	stomach
29	chr4:78080200-78086800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr4:78080200-78089800	Weak transcription	Aorta	Aorta
31	chr4:78080200-78094400	Weak transcription	Psoas Muscle	Psoas
32	chr4:78080400-78082600	Weak transcription	HUVEC	blood vessel
33	chr4:78080400-78083000	Weak transcription	Brain Hippocampus Middle	brain
34	chr4:78080400-78083000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr4:78080400-78085000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr4:78080400-78088000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr4:78080400-78088600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr4:78080400-78089000	Strong transcription	NHDF-Ad	bronchial
39	chr4:78080400-78090800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr4:78080400-78091400	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr4:78080400-78092400	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr4:78080600-78083000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr4:78080600-78084000	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr4:78080600-78084200	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr4:78080600-78088200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr4:78080600-78089600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr4:78080600-78091800	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr4:78080600-78091800	Strong transcription	Osteobl	bone
49	chr4:78080800-78082600	Weak transcription	Primary T cells from cord blood	blood
50	chr4:78080800-78083000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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