Variant report

Variant	rs34171188
Chromosome Location	chr4:78100248-78100249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:78093090..78096475-chr4:78097818..78101678,3	MCF-7	breast:
2	chr4:77993628..77998489-chr4:78099407..78102075,4	MCF-7	breast:
3	chr4:78092684..78094555-chr4:78098278..78100487,2	MCF-7	breast:
4	chr4:78089519..78092376-chr4:78099146..78100867,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118816	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13108325	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13115931	0.95[EUR][1000 genomes]
rs13134753	1.00[ASN][1000 genomes]
rs17397736	0.95[EUR][1000 genomes]
rs17397972	0.95[EUR][1000 genomes]
rs17398028	0.95[EUR][1000 genomes]
rs34623364	0.95[EUR][1000 genomes]
rs34757592	0.95[EUR][1000 genomes]
rs34820788	0.87[ASN][1000 genomes]
rs35974904	0.94[ASN][1000 genomes]
rs36045205	0.95[EUR][1000 genomes]
rs4150031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4150044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4150052	0.87[ASN][1000 genomes]
rs4150067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4150084	0.87[ASN][1000 genomes]
rs4150090	0.87[ASN][1000 genomes]
rs6816591	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6822060	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71607401	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71609303	0.87[ASN][1000 genomes]
rs729239	0.81[EUR][1000 genomes]
rs729241	0.81[EUR][1000 genomes]
rs7655142	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7659891	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78084600-78102200	Weak transcription	Spleen	Spleen
2	chr4:78087400-78100600	Weak transcription	Hela-S3	cervix
3	chr4:78089400-78108000	Weak transcription	Left Ventricle	heart
4	chr4:78090400-78109800	Weak transcription	Gastric	stomach
5	chr4:78091800-78105000	Weak transcription	Adipose Nuclei	Adipose
6	chr4:78092200-78106000	Weak transcription	Primary T cells from cord blood	blood
7	chr4:78092400-78100400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:78092400-78100800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr4:78092600-78100800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:78092600-78108600	Weak transcription	Thymus	Thymus
11	chr4:78094400-78114200	Weak transcription	Primary B cells from cord blood	blood
12	chr4:78095400-78101200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:78096800-78108200	Weak transcription	Fetal Brain Female	brain
14	chr4:78097400-78101200	Enhancers	Fetal Muscle Leg	muscle
15	chr4:78097600-78101000	Enhancers	HSMMtube	muscle
16	chr4:78098000-78100800	Weak transcription	Esophagus	oesophagus
17	chr4:78098200-78101000	Enhancers	HSMM	muscle
18	chr4:78099000-78108000	Weak transcription	Brain Germinal Matrix	brain
19	chr4:78099400-78100400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr4:78099400-78109800	Weak transcription	Fetal Stomach	stomach
21	chr4:78099400-78111200	Weak transcription	NHEK	skin
22	chr4:78099800-78100400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:78099800-78100400	Enhancers	Fetal Muscle Trunk	muscle
24	chr4:78099800-78100400	Enhancers	Placenta	Placenta
25	chr4:78100000-78108000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr4:78100200-78100600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr4:78100200-78101000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:78100200-78108000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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