Variant report

Variant	rs13108325
Chromosome Location	chr4:78109257-78109258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13115931	0.98[EUR][1000 genomes]
rs13134753	1.00[ASN][1000 genomes]
rs17397736	0.98[EUR][1000 genomes]
rs17397972	0.98[EUR][1000 genomes]
rs17398028	0.98[EUR][1000 genomes]
rs34171188	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34623364	0.98[EUR][1000 genomes]
rs34757592	0.98[EUR][1000 genomes]
rs34820788	0.87[ASN][1000 genomes]
rs35974904	0.94[ASN][1000 genomes]
rs36045205	0.98[EUR][1000 genomes]
rs4150031	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4150044	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4150052	0.87[ASN][1000 genomes]
rs4150067	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4150084	0.87[ASN][1000 genomes]
rs4150090	0.87[ASN][1000 genomes]
rs6816591	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6822060	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71607401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71609303	0.87[ASN][1000 genomes]
rs7655142	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1000730	chr4:78109138-78210296	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78090400-78109800	Weak transcription	Gastric	stomach
2	chr4:78094400-78114200	Weak transcription	Primary B cells from cord blood	blood
3	chr4:78099400-78109800	Weak transcription	Fetal Stomach	stomach
4	chr4:78099400-78111200	Weak transcription	NHEK	skin
5	chr4:78101200-78109600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:78107400-78111200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:78108000-78110200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:78108000-78110200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:78108000-78111000	Enhancers	HSMMtube	muscle
10	chr4:78108000-78112000	Enhancers	Fetal Muscle Leg	muscle
11	chr4:78108200-78111400	Enhancers	Fetal Muscle Trunk	muscle
12	chr4:78108800-78109600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:78108800-78109600	Weak transcription	Fetal Brain Male	brain
14	chr4:78108800-78110200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:78109000-78109400	Weak transcription	Brain Angular Gyrus	brain
16	chr4:78109000-78109600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr4:78109000-78110000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:78109000-78110200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:78109000-78110200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr4:78109000-78113800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr4:78109000-78114000	Weak transcription	Thymus	Thymus
22	chr4:78109000-78114200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr4:78109000-78114200	Weak transcription	Fetal Thymus	thymus
24	chr4:78109000-78114400	Weak transcription	Monocytes-CD14+_RO01746	blood

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