Variant report

Variant	rs4150052
Chromosome Location	chr4:78079772-78079773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77993925..77999822-chr4:78072652..78081114,32	MCF-7	breast:
2	chr4:77995650..77999094-chr4:78076501..78080726,6	K562	blood:
3	chr4:77994107..77999899-chr4:78076204..78082875,32	MCF-7	breast:
4	chr4:77994543..78000148-chr4:78076403..78082799,9	K562	blood:

Variant related genes	Relation type
ENSG00000118816	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13108325	0.87[ASN][1000 genomes]
rs13115931	0.82[CEU][hapmap]
rs13134753	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17397736	0.88[CEU][hapmap]
rs17398028	0.88[CEU][hapmap]
rs34171188	0.87[ASN][1000 genomes]
rs34820788	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35974904	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4150031	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs4150044	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs4150067	1.00[ASN][1000 genomes]
rs4150084	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4150090	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59493111	0.86[ASN][1000 genomes]
rs6816591	0.88[CEU][hapmap]
rs6822060	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[ASN][1000 genomes]
rs71607401	1.00[ASN][1000 genomes]
rs71609303	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729239	0.86[ASN][1000 genomes]
rs729241	0.86[ASN][1000 genomes]
rs7655142	0.86[ASN][1000 genomes]
rs7657629	0.86[ASN][1000 genomes]
rs7659891	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78076600-78080400	Active TSS	Fetal Brain Male	brain
2	chr4:78076800-78079800	Active TSS	Fetal Muscle Trunk	muscle
3	chr4:78076800-78080000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr4:78076800-78080200	Active TSS	H9 Cell Line	embryonic stem cell
5	chr4:78076800-78080200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:78076800-78080800	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr4:78077000-78080000	Active TSS	H1 Cell Line	embryonic stem cell
8	chr4:78077000-78080000	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr4:78077000-78080000	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr4:78077200-78079800	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr4:78077200-78079800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:78077200-78079800	Active TSS	Brain Angular Gyrus	brain
13	chr4:78077200-78079800	Active TSS	NHLF	lung
14	chr4:78077200-78080000	Active TSS	Ovary	ovary
15	chr4:78077200-78080000	Active TSS	Rectal Smooth Muscle	rectum
16	chr4:78077200-78080200	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr4:78077200-78080200	Active TSS	Aorta	Aorta
18	chr4:78077200-78080400	Active TSS	Stomach Smooth Muscle	stomach
19	chr4:78077200-78080600	Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr4:78077200-78080800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr4:78077400-78079800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:78077400-78080000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr4:78077400-78080000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr4:78077400-78080000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:78077400-78080000	Active TSS	Colonic Mucosa	Colon
26	chr4:78077400-78080000	Active TSS	Duodenum Mucosa	Duodenum
27	chr4:78077400-78080000	Active TSS	Placenta Amnion	Placenta Amnion
28	chr4:78077400-78080000	Active TSS	Right Ventricle	heart
29	chr4:78077400-78080000	Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr4:78077400-78080200	Active TSS	Psoas Muscle	Psoas
31	chr4:78077400-78080400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:78077400-78080400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr4:78077400-78080600	Active TSS	Fetal Kidney	kidney
34	chr4:78077400-78081000	Active TSS	Fetal Brain Female	brain
35	chr4:78077600-78079800	Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr4:78077600-78079800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr4:78077600-78079800	Active TSS	Left Ventricle	heart
38	chr4:78077600-78079800	Active TSS	Lung	lung
39	chr4:78077600-78080000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr4:78077600-78080000	Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr4:78077600-78080000	Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr4:78077600-78080000	Active TSS	Gastric	stomach
43	chr4:78077600-78080200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:78077600-78080200	Active TSS	Esophagus	oesophagus
45	chr4:78077600-78080200	Active TSS	NHDF-Ad	bronchial
46	chr4:78077600-78080600	Active TSS	Thymus	Thymus
47	chr4:78077800-78079800	Active TSS	HSMMtube	muscle
48	chr4:78077800-78080200	Active TSS	Rectal Mucosa Donor 29	rectum
49	chr4:78077800-78080600	Active TSS	GM12878-XiMat	blood
50	chr4:78077800-78081600	Active TSS	HSMM	muscle

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