Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78056054..78058366-chr4:78059976..78061597,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13115931	1.00[CEU][hapmap]
rs17397736	1.00[CEU][hapmap]
rs17398028	1.00[CEU][hapmap]
rs34820788	0.86[ASN][1000 genomes]
rs35974904	0.80[ASN][1000 genomes]
rs4150031	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4150044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4150052	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4150067	0.86[ASN][1000 genomes]
rs4150084	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4150090	0.86[ASN][1000 genomes]
rs4343750	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59493111	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816591	1.00[CEU][hapmap]
rs6822060	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71607401	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71609303	0.86[ASN][1000 genomes]
rs729239	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729241	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655142	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659891	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78057600-78062400	Weak transcription	Fetal Intestine Small	intestine
2	chr4:78059000-78061800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:78059000-78067200	Weak transcription	Small Intestine	intestine
4	chr4:78059200-78067200	Weak transcription	Fetal Lung	lung

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