Variant report

Variant	rs729241
Chromosome Location	chr4:78063136-78063137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs34171188	0.81[EUR][1000 genomes]
rs34820788	0.86[ASN][1000 genomes]
rs35974904	0.80[ASN][1000 genomes]
rs4150031	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4150044	0.86[ASN][1000 genomes]
rs4150052	0.86[ASN][1000 genomes]
rs4150067	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4150084	0.86[ASN][1000 genomes]
rs4150090	0.86[ASN][1000 genomes]
rs4343750	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59493111	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822060	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71607401	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71609303	0.86[ASN][1000 genomes]
rs729239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655142	1.00[ASN][1000 genomes]
rs7657629	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659891	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78059000-78067200	Weak transcription	Small Intestine	intestine
2	chr4:78059200-78067200	Weak transcription	Fetal Lung	lung
3	chr4:78062400-78064400	Enhancers	Fetal Intestine Small	intestine
4	chr4:78062400-78065200	Enhancers	Fetal Intestine Large	intestine
5	chr4:78062600-78063600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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