Variant report

Variant	rs7679720
Chromosome Location	chr4:85647954-85647955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10049510	0.92[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56353041	1.00[EUR][1000 genomes]
rs58516106	1.00[EUR][1000 genomes]
rs60716930	1.00[EUR][1000 genomes]
rs6821491	1.00[EUR][1000 genomes]
rs6838671	1.00[EUR][1000 genomes]
rs73831539	1.00[EUR][1000 genomes]
rs7659019	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9306982	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85587800-85648400	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr4:85604400-85674800	Weak transcription	Small Intestine	intestine
3	chr4:85613400-85649400	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr4:85613600-85650200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr4:85615000-85677600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr4:85619200-85726000	Weak transcription	Hela-S3	cervix
7	chr4:85620200-85648000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:85620800-85663400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:85629200-85662400	Weak transcription	Colonic Mucosa	Colon
10	chr4:85630000-85656400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:85630000-85659000	Weak transcription	Right Ventricle	heart
12	chr4:85630200-85656400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:85632600-85649000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:85632600-85658200	Weak transcription	A549	lung
15	chr4:85633400-85667800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:85636400-85701200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr4:85637400-85658400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:85640200-85663200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:85642200-85653600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr4:85642200-85656000	Weak transcription	NHEK	skin
21	chr4:85642600-85653600	Weak transcription	Fetal Brain Male	brain
22	chr4:85642600-85653600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr4:85642800-85648600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr4:85642800-85653600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr4:85642800-85653800	Weak transcription	NHLF	lung
26	chr4:85642800-85654000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr4:85642800-85654000	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr4:85642800-85654000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr4:85642800-85654200	Weak transcription	Ovary	ovary
30	chr4:85642800-85656400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr4:85642800-85656400	Weak transcription	Aorta	Aorta
32	chr4:85642800-85656400	Weak transcription	Pancreas	Pancrea
33	chr4:85642800-85658200	Weak transcription	Fetal Stomach	stomach
34	chr4:85642800-85658200	Weak transcription	Left Ventricle	heart
35	chr4:85642800-85658200	Weak transcription	Lung	lung
36	chr4:85642800-85659000	Weak transcription	Fetal Intestine Small	intestine
37	chr4:85642800-85660000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr4:85642800-85668000	Weak transcription	Spleen	Spleen
39	chr4:85642800-85678000	Weak transcription	Gastric	stomach
40	chr4:85643000-85659000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr4:85643200-85652600	Weak transcription	Fetal Brain Female	brain
42	chr4:85643200-85653600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr4:85643200-85656400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr4:85643400-85653800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr4:85643400-85654000	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr4:85644200-85649600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr4:85644200-85660400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr4:85644400-85648200	Weak transcription	Fetal Heart	heart
49	chr4:85644400-85654200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr4:85644400-85656400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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