Variant report

Variant	rs6838671
Chromosome Location	chr4:85577491-85577492
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85570877..85573206-chr4:85576322..85578713,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10049510	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1120	0.83[YRI][hapmap]
rs56353041	1.00[EUR][1000 genomes]
rs58516106	1.00[EUR][1000 genomes]
rs60716930	1.00[EUR][1000 genomes]
rs6821491	1.00[EUR][1000 genomes]
rs73831539	1.00[EUR][1000 genomes]
rs7659019	1.00[EUR][1000 genomes]
rs7679720	1.00[EUR][1000 genomes]
rs9306982	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85526800-85583000	Weak transcription	Gastric	stomach
2	chr4:85529400-85581600	Weak transcription	Ovary	ovary
3	chr4:85529600-85587600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:85564800-85587800	Weak transcription	Fetal Kidney	kidney
5	chr4:85568800-85578600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:85568800-85589600	Weak transcription	Brain Angular Gyrus	brain
7	chr4:85569200-85587200	Weak transcription	Brain Anterior Caudate	brain
8	chr4:85569600-85577600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:85569600-85579200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:85569600-85582600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr4:85571000-85588800	Weak transcription	Left Ventricle	heart
12	chr4:85571000-85592400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:85571200-85581400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr4:85571400-85579200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr4:85572200-85587800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:85572400-85577800	Weak transcription	Fetal Intestine Large	intestine
17	chr4:85572400-85579200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:85573200-85578800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:85573200-85588600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:85573400-85578800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:85573400-85582400	Weak transcription	Fetal Heart	heart
22	chr4:85574000-85578600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr4:85577200-85577600	ZNF genes & repeats	Fetal Intestine Small	intestine
24	chr4:85577200-85587800	Weak transcription	HSMMtube	muscle

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