Variant report

Variant	rs7682149
Chromosome Location	chr4:22734612-22734613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10013725	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10017847	1.00[AMR][1000 genomes]
rs73801244	1.00[AMR][1000 genomes]
rs7657113	0.82[AFR][1000 genomes]
rs7661132	0.82[AFR][1000 genomes]
rs7662092	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7674947	0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs7688408	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7692758	1.00[AMR][1000 genomes]
rs9884726	1.00[AMR][1000 genomes]
rs9998030	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv980186	chr4:22723861-22736422	Strong transcription Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22699200-22737600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:22702600-22752600	Weak transcription	Fetal Intestine Small	intestine
3	chr4:22717600-22736200	Weak transcription	Liver	Liver
4	chr4:22717800-22753800	Weak transcription	Fetal Intestine Large	intestine
5	chr4:22731400-22737000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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