Variant report

Variant	rs10017847
Chromosome Location	chr4:22876415-22876416
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10013725	1.00[AMR][1000 genomes]
rs28736293	0.84[AFR][1000 genomes]
rs73801244	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7662092	1.00[AMR][1000 genomes]
rs7682149	1.00[AMR][1000 genomes]
rs7688408	1.00[AMR][1000 genomes]
rs7692758	1.00[AMR][1000 genomes]
rs9884726	1.00[AMR][1000 genomes]
rs9998030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1006697	chr4:22864883-22992212	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv829884	chr4:22865713-23031235	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1005822	chr4:22869022-23013619	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22874800-22877200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr4:22874800-22878800	Enhancers	Fetal Intestine Small	intestine
3	chr4:22874800-22879000	Enhancers	Fetal Intestine Large	intestine
4	chr4:22876400-22877000	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr4:22876400-22878000	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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