Variant report

Variant	rs7684674
Chromosome Location	chr4:100197359-100197360
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17028473	1.00[AMR][1000 genomes]
rs17028505	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17028834	1.00[MEX][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs28364319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28720147	0.88[AFR][1000 genomes]
rs28730571	1.00[AMR][1000 genomes]
rs28730610	1.00[AMR][1000 genomes]
rs29001339	1.00[AMR][1000 genomes]
rs29001631	1.00[AMR][1000 genomes]
rs55820222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55890003	0.88[AFR][1000 genomes]
rs59728850	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6532799	0.89[ASW][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs6820445	0.88[AFR][1000 genomes]
rs6828819	1.00[AMR][1000 genomes]
rs6831854	1.00[AMR][1000 genomes]
rs6835771	1.00[AMR][1000 genomes]
rs72897134	1.00[AMR][1000 genomes]
rs72899248	0.83[AFR][1000 genomes]
rs72901221	0.87[AFR][1000 genomes]
rs72901222	0.88[AFR][1000 genomes]
rs72901271	1.00[AMR][1000 genomes]
rs72901287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72901294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72901295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7664906	1.00[AMR][1000 genomes]
rs7689911	0.89[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv879656	chr4:99976646-100533722	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv3355763	chr4:100070566-100376814	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1014237	chr4:100102701-100365700	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1010988	chr4:100105463-100444445	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1000659	chr4:100117276-100444445	Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv999549	chr4:100121609-100351749	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3353320	chr4:100147870-100425701	Genic enhancers ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv3394995	chr4:100147890-100425671	Enhancers Genic enhancers Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7684674	ST7OT4	trans	lymphoblastoid	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100186600-100197400	Weak transcription	Fetal Lung	lung
2	chr4:100189400-100212400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:100192400-100205600	Weak transcription	Aorta	Aorta
4	chr4:100195200-100197600	Weak transcription	Liver	Liver
5	chr4:100196200-100210800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:100196400-100197400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:100196400-100197400	Weak transcription	Fetal Intestine Small	intestine
8	chr4:100196600-100197600	Weak transcription	Fetal Intestine Large	intestine

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