Variant report

Variant	rs7686188
Chromosome Location	chr4:26643155-26643156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16878551	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7676433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26606400-26656600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:26608800-26643600	Weak transcription	Fetal Heart	heart
3	chr4:26609600-26649400	Weak transcription	Psoas Muscle	Psoas
4	chr4:26613800-26657200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:26616600-26662600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:26618200-26657200	Weak transcription	Pancreas	Pancrea
7	chr4:26619600-26645600	Weak transcription	Spleen	Spleen
8	chr4:26620600-26643800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:26622000-26643800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:26622400-26645600	Weak transcription	NHLF	lung
11	chr4:26622400-26662400	Weak transcription	Right Ventricle	heart
12	chr4:26623000-26670400	Weak transcription	Gastric	stomach
13	chr4:26625600-26665600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:26626000-26645000	Weak transcription	Brain Substantia Nigra	brain
15	chr4:26627600-26644400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:26629000-26644400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr4:26629200-26680800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr4:26629400-26656800	Weak transcription	Lung	lung
19	chr4:26632800-26643800	Weak transcription	Primary B cells from cord blood	blood
20	chr4:26633800-26657000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:26633800-26658600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:26634000-26657000	Weak transcription	Brain Hippocampus Middle	brain
23	chr4:26635000-26675200	Weak transcription	NHDF-Ad	bronchial
24	chr4:26636000-26643600	Weak transcription	Liver	Liver
25	chr4:26637600-26649400	Weak transcription	Placenta	Placenta
26	chr4:26638600-26643600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:26638800-26644600	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr4:26639000-26643600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:26639200-26643400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:26639200-26643800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:26639600-26643600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr4:26640000-26691400	Weak transcription	Colon Smooth Muscle	Colon
33	chr4:26640400-26651000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr4:26640800-26643400	Weak transcription	HSMM	muscle
35	chr4:26640800-26644400	Weak transcription	Brain Anterior Caudate	brain
36	chr4:26640800-26645000	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr4:26640800-26662800	Weak transcription	NH-A	brain
38	chr4:26641000-26645600	Weak transcription	Adipose Nuclei	Adipose
39	chr4:26641000-26661400	Weak transcription	HSMMtube	muscle
40	chr4:26641000-26662000	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr4:26641000-26664000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr4:26641800-26643800	Strong transcription	Thymus	Thymus
43	chr4:26641800-26644800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr4:26642000-26649000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr4:26642000-26662000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr4:26642400-26645600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr4:26642400-26649600	Weak transcription	Dnd41	blood
48	chr4:26642400-26657000	Weak transcription	Fetal Lung	lung
49	chr4:26642400-26657200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr4:26642400-26659800	Weak transcription	Fetal Brain Male	brain

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