Variant report

Variant	rs7689781
Chromosome Location	chr4:174072755-174072756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174071309..174073800-chr4:174089324..174091660,2	MCF-7	breast:
2	chr4:174072728..174075082-chr4:174179224..174181995,2	K562	blood:
3	chr4:174072073..174074614-chr4:174076113..174077879,2	K562	blood:
4	chr4:174072381..174074317-chr4:174086673..174089260,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HMGB2-9	chr4:174071424-174074003	NONHSAT099222

Variant related genes	Relation type
ENSG00000109586	Chromatin interaction
ENSG00000245213	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10002880	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10010943	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018520	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10520255	0.81[CEU][hapmap]
rs10520256	0.81[CEU][hapmap]
rs11932721	1.00[CHB][hapmap]
rs11942280	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs13116270	0.81[CEU][hapmap]
rs13137793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13141844	0.81[CEU][hapmap]
rs13151627	0.81[CEU][hapmap]
rs1316412	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17059191	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059207	0.81[CEU][hapmap]
rs17059217	0.81[CEU][hapmap]
rs17059255	1.00[CHB][hapmap]
rs2006808	0.96[EUR][1000 genomes]
rs2332653	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332658	0.81[CEU][hapmap]
rs34303112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35773919	0.96[EUR][1000 genomes]
rs35932490	0.96[EUR][1000 genomes]
rs4608791	0.81[CEU][hapmap]
rs4696054	0.81[CEU][hapmap]
rs62341090	0.96[EUR][1000 genomes]
rs62341092	0.96[EUR][1000 genomes]
rs6553686	0.81[CEU][hapmap]
rs6553687	1.00[CHB][hapmap]
rs6822924	0.81[CEU][hapmap]
rs6829566	0.82[CEU][hapmap]
rs6835517	1.00[CEU][hapmap]
rs6840841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855544	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856630	1.00[CHB][hapmap]
rs71609812	0.96[EUR][1000 genomes]
rs722826	0.81[CEU][hapmap]
rs722827	0.81[CEU][hapmap]
rs7664269	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664652	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7669267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7689627	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9312537	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9312538	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs934358	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs9884450	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884453	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884604	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9995556	0.81[CEU][hapmap]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174047000-174079000	Weak transcription	Fetal Thymus	thymus
2	chr4:174055000-174086000	Weak transcription	Thymus	Thymus
3	chr4:174065200-174087200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:174065400-174083600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:174066800-174089000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:174066800-174089000	Weak transcription	HSMM	muscle
7	chr4:174069200-174088800	Weak transcription	HMEC	breast
8	chr4:174071400-174073400	Weak transcription	Aorta	Aorta
9	chr4:174071800-174073800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:174071800-174080800	Weak transcription	Primary B cells from cord blood	blood
11	chr4:174072000-174077000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr4:174072000-174081000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr4:174072200-174089000	Weak transcription	Fetal Stomach	stomach

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